1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGATGCCTACATGACCGGAACAATATTTTCATGGCTTTGCAAGCTCCTTGAAGCCCGAGGAAGAATTTGTGCTCTTGGCAGTAGTCCTGTGGACATTCTGgtgaataaaatctgacagactttttccattatgtattacatgtgccacagttgatatgatcattcagaaaaagccggtttttgttttgctcattctttagtacgaacatactcttattgaagaaatgtgtcgtaatggtgctaagtccagtaaggttttgatgtttccag
species | Physcomitrella patens |
transcript | PP1S55_48V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGCCCGAGGAAGAATTTGTGCTCTTGGCAGTAGTCCTGTGGACATTCTG GCAGTAAAAGAATATGGAAACAGAATAGCAGTACGGCGATGCGACCTGCCCEST: gi|18332949|gb|BJ164962.1|BJ164962
genomic: AAGCCCGAGGAAGAATTTGTGCTCTTGGCAGTAGTCCTGTGGACATTCTGgtgaataaaa ... atgtttccagGCAGTAAAAGAATATGGAAACAGAATAGCAGTACGGCGATGCGACCTGCCC
EST: AAGCCCGAGGAAGAATTTGTGCTCTTGGCAGTAGTCCTGTGGACATTCTG GCAGTAAAAGAATATGGAAACAGAATAGCAGTACGGCGATGCGACCTGCCCEST: gi|37852916|gb|BJ610924.1|BJ610924
genomic: AAGCCCGAGGAAGAATTTGTGCTCTTGGCAGTAGTCCTGTGGACATTCTGgtgaataaaa ... atgtttccagGCAGTAAAAGAATATGGAAACAGAATAGCAGTACGGCGATGCGACCTGCCC
EST: AAGCCCGAGGAAGAATTTGTGCTCTTGGCAGTAGTCCTGTGGACATTCTG GCAGTAAAAGAATATGGAAACAGAATAGCAGTACGGCGATGCGACCTGCCC
genomic: AAGCCCGAGGAAGAATTTGTGCTCTTGGCAGTAGTCCTGTGGACATTCTGgtgaataaaa ... atgtttccagGCAGTAAAAGAATATGGAAACAGAATAGCAGTACGGCGATGCGACCTGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGCCTACATGACCGGAACAATATTTTCATGGCTTTGCAAGCTCCTTGAAGCCCGAGGAAGAATTTGTGCTCTTGGCAGTAGTCCTGTGGACATTCTGgtgaataaaatctgacagactttttccattatgtattacatgtgccacagttgatatgatcattcagaaaaagccggtttttgttttgctcattctttagtacgaacatactcttattgaagaaatgtgtcgtaatggtgctaagtccagtaaggttttgatgtttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA