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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acctaagaattttctaacgttttcttgttcattactgctatctttttggatatcatccctacctgaaggatggaaactctttatctggtatttgtaacagACTCCGGACAATTGACTAACGTGCAATTACCAAGAGTGGATCATGCTGACCAGTTTGATCGATACAAAAGTACATCTGATGAGTTAGGCCGCTACCATGA

Basic information

species Physcomitrella patens
transcript PP1S55_48V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208356206|gb|DC946254.1|DC946254
EST:     CCAAGAAGAAGCCCAAAGTGTGCACGTGATTACTGCAAATCTCTCTTCTG                         ACTCCGGACAATTGACTAACGCGCAATTACCAAGAGTGGATCATGCTGACC
genomic: CCAAGAAGAAGCCCAAAGTGTGCACGTGATTACTGCAAATCTCTCTTCTGgtaagagaat ... tttgtaacagACTCCGGACAATTGACTAACGTGCAATTACCAAGAGTGGATCATGCTGACC
EST: gi|37852916|gb|BJ610924.1|BJ610924
EST:     CCAAGAAGAAGCCCAAAGTGTGCACGTGATTACTGCAAATCTCTCTTCTG                         ACTCCGGACAATTGACTAACGTGCAATTACCAAGAGTGGATCATGCTGACC
genomic: CCAAGAAGAAGCCCAAAGTGTGCACGTGATTACTGCAAATCTCTCTTCTGgtaagagaat ... tttgtaacagACTCCGGACAATTGACTAACGTGCAATTACCAAGAGTGGATCATGCTGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggatatcatccctacctgaaggatggaaactctttatctggtatttgtaacagACTCCGGACAATTGACTAACGTGCAATTACCAAGAGTGGATCATGCTGACCAGTTTGATCGATACAAAAGTACATCTGATGAGTTAGGCCGCTACCATGA
                                           tatttgtaa  TA-rich tract