Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATTTCACCCATCAAAAACACGGTTCAGAAGTTTACTATATTTTTCGCATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAATgtaagtacaaagcactccactaatccttgccaagtgggaccaatttctgaatcggaattgatttctaacgcagtatagatgttaagagacaacacatacttaatgtactgtttgcaatacatgcag

Basic information

species Physcomitrella patens
transcript PP1S55_317V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162266519|gb|FC442555.1|FC442555
EST:     CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAAT                         GTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
genomic: CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAATgtaagtacaa ... atacatgcagGTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
EST: gi|162270099|gb|FC446799.1|FC446799
EST:     CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAAT                         GTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
genomic: CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAATgtaagtacaa ... atacatgcagGTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
EST: gi|162156079|gb|FC332246.1|FC332246
EST:     CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAAT                         GTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
genomic: CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAATgtaagtacaa ... atacatgcagGTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
EST: gi|22492515|gb|BU052438.1|BU052438
EST:     CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAAT                         GTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
genomic: CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAATgtaagtacaa ... atacatgcagGTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
EST: gi|37842094|gb|BJ600102.1|BJ600102
EST:     CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAAT                         GTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
genomic: CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAATgtaagtacaa ... atacatgcagGTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
EST: gi|22491929|gb|BU051852.1|BU051852
EST:     CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAAT                         GTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
genomic: CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAATgtaagtacaa ... atacatgcagGTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
EST: gi|22131375|gb|BQ826583.1|BQ826583
EST:     CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAAT                         GTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
genomic: CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAATgtaagtacaa ... atacatgcagGTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
EST: gi|162266520|gb|FC442556.1|FC442556
EST:     CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAAT                         GTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT
genomic: CATTTTGGCAAGCCAAGCAGCCTAAACGTATAGAATCAGTTCTACGAAATgtaagtacaa ... atacatgcagGTATACAAGGATCAAACAAATGTTGATGAGTATTTGGTGAATTCCATTGTT