1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGAAGGCATTGATAGATTACACCGCCGATGTATGGCGGGATCAAGTGGCGGACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAGgtatgccattgctccatgagcaaatcctatttcaacttttttcgtgattgttcctagcaagcttgatggatgcttattccttagaattgtttgatgtcatctctagttctggtagattttctggtctgaccactggtttgtccctgtgcag
species | Physcomitrella patens |
transcript | PP1S55_317V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAG TGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGTEST: gi|162270099|gb|FC446799.1|FC446799
genomic: GACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAGgtatgccatt ... ccctgtgcagTGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGT
EST: GAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAG TGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGTEST: gi|100400504|gb|BY954510.1|BY954510
genomic: GAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAGgtatgccatt ... ccctgtgcagTGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGT
EST: GACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAG TGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGTEST: gi|22491929|gb|BU051852.1|BU051852
genomic: GACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAGgtatgccatt ... ccctgtgcagTGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGT
EST: GACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAG TGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGTEST: gi|162270100|gb|FC446800.1|FC446800
genomic: GACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAGgtatgccatt ... ccctgtgcagTGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGT
EST: GACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAG TGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGT
genomic: GACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAGgtatgccatt ... ccctgtgcagTGTGGGCGGATACACTGTTTTGAGCACCGCCGCTGCCAATCCTGATCTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGGCATTGATAGATTACACCGCCGATGTATGGCGGGATCAAGTGGCGGACTTTGTGAGGGATGTGGTGGGCAAGCCAGCCGTCCTTGCAGGCAACAGgtatgccattgctccatgagcaaatcctatttcaacttttttcgtgattgttcctagcaagcttgatggatgcttattccttagaattgtttgatgtcatctctagttctggtagattttctggtctgaccactggtttgtccctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG