1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tggagttgagtagtttctttgagagctgccaaaatacaccagggattacggcaccaataaattttcttttctgactgaatgttttggtactaacatgcagGTACTACGACCTTTTTCTCCAAAATTATCTGCTTCTTGCTAAGGACAAAGGATGGAAGCGACCCTTGCTAG
species | Physcomitrella patens |
transcript | PP1S55_314V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG GTACTACGACCTTTTTCTCCAAAATTATCTGEST: gi|208378199|gb|DC918820.1|DC918820
genomic: GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGGgtaaggtttg ... taacatgcagGTACTACGACCTTTTTCTCCAAAATTATCTG
EST: GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG GTACTACGACCTTTTTCTCCAAAATTATCTGCTTCTTGCTAAGGACAAAGGEST: gi|19785753|gb|BQ040382.1|BQ040382
genomic: GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGGgtaaggtttg ... taacatgcagGTACTACGACCTTTTTCTCCAAAATTATCTGCTTCTTGCTAAGGACAAAGG
EST: GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG GTACTACGACCTTTTTCTCEST: gi|7047382|gb|AW477276.1|AW477276
genomic: GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGGgtaaggtttg ... taacatgcagGTACTACGACCTTTTTCTC
EST: GATTGGCTNTCGATCGAAAGGGGGGCCGNCTTGGACGTGGTGGANG GTACTACGACCCTTTTCTCCAAAATTATCTGCTTCTTGCTAAAGACAAAGG
genomic: GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGGgtaaggtttg ... taacatgcagGTACTACGACCTTTTTCTCCAAAATTATCTGCTTCTTGCTAAGGACAAAGG
ttacggcaccaataaattttcttttctgactgaatgttttggtactaacatgcagGTACTACGACCTTTTTCTCCAAAATTATCTGCTTCTTGCTAAGGACAAAGGATGGAAGCGACCCTTGCTAG
tactaac putative branch site (score: 0)
aataaattttcttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggagttgagtagtttctttgagagctgccaaaatacaccagggattacggcaccaataaattttcttttctgactgaatgttttggtactaacatgcagGTACTACGACCTTTTTCTCCAAAATTATCTGCTTCTTGCTAAGGACAAAGGATGGAAGCGACCCTTGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG