1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacctctaccgtttactgttcattttaatattcatacatgctcctttaatttggagttgtttcccatctaggactaggttctcggaatactgaatttatcagtttgttttacaatcgatacgctgtctttgacattgttatcctgatgggtaaactttggtctctgattggacagGATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG
species | Physcomitrella patens |
transcript | PP1S55_314V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAG GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGGEST: gi|208378199|gb|DC918820.1|DC918820
genomic: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAGgtacctctac ... gattggacagGATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG
EST: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAG GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGGEST: gi|19785753|gb|BQ040382.1|BQ040382
genomic: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAGgtacctctac ... gattggacagGATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG
EST: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAG GATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGGEST: gi|7047382|gb|AW477276.1|AW477276
genomic: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAGgtacctctac ... gattggacagGATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG
EST: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAG GATTGGCTNTCGATCGAAAGGGGGGCCGNCTTGGACGTGGTGGANGEST: gi|19788181|gb|BQ040733.1|BQ040733
genomic: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAGgtacctctac ... gattggacagGATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG
EST: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAG GATTGGCTTTCGATCGAA-GGGGGGCCGCCTTGG
genomic: TGATGCAGACAACTGAGCCCCTGGACCTGCTCTTACTGCCAGgtacctctac ... gattggacagGATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGG
cgctgtctttgacattgttatcctgatgggtaaactttggtctctgattggacagGATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG
attgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctctaccgtttactgttcattttaatattcatacatgctcctttaatttggagttgtttcccatctaggactaggttctcggaatactgaatttatcagtttgttttacaatcgatacgctgtctttgacattgttatcctgatgggtaaactttggtctctgattggacagGATTGGCTTTCGATCGAAAGGGGGGCCGCCTTGGACGTGGTGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG