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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcattttcaaacaccgattcgtgcatcattacatgtctctttgtaccacatcgtaaccgtcgagctgatgtcgtgaagcacaatcaagtgatatcttttgtgataattccgaagcatggtgatgttcatttggttgatgtgcgagtattttttcgattttgagcagCATGTTCTCTTCTGAGTCATACCTCCCAAGCTCTAGCAGGGGGCCATCTGAGCATCCGATTCCCGTTGGGCCAGAAG

Basic information

species Physcomitrella patens
transcript PP1S55_304V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162258515|gb|FC434730.1|FC434730
EST:     CACCCCAACCTTCGAGACGCACAAAGGTCACAGACGTCTTTACAACTGGG                         CATGTTCTCTTTTGAGTCATACCTCCCAAGCTCTAGCAGGGGGCCATCTGA
genomic: CACCCCAACCTTCGAGACGCACAAAGGTCACAGACGTCTTTACAACTGGGgtacgcattt ... ttttgagcagCATGTTCTCTTCTGAGTCATACCTCCCAAGCTCTAGCAGGGGGCCATCTGA
EST: gi|37845624|gb|BJ603632.1|BJ603632
EST:     CACCCCAACCTTCGAGACGCACAAAGGTCACAGACGTCTTTACAACTGGG                         CATGTTCTCTTCTGAGTCATACCTCCCAAGCTCTAGCAGGGGGCCATCTGA
genomic: CACCCCAACCTTCGAGACGCACAAAGGTCACAGACGTCTTTACAACTGGGgtacgcattt ... ttttgagcagCATGTTCTCTTCTGAGTCATACCTCCCAAGCTCTAGCAGGGGGCCATCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcatggtgatgttcatttggttgatgtgcgagtattttttcgattttgagcagCATGTTCTCTTCTGAGTCATACCTCCCAAGCTCTAGCAGGGGGCCATCTGAGCATCCGATTCCCGTTGGGCCAGAAG
                    ggttgat  putative branch site (score: 5)
                                  tattttttcgatttt  TA-rich tract