Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttagctgtggtgtggataggtttttgaaactttatttctgaggcttatcctggcaaaatacttatcgttctggtcttagtttgtgtggtctattagcatcgtccataaggtccaatctatatattaattgaaacgggttaggttttctggtgtattgctgcagCTTGCAGATGCTCAAGGGATTGCTGACGCAGTTACAGCTCGAGCGAACGTGTCTGAAAGCCCTAGGCCCTTGACGAGCGCTCTCACACGAGACATCGTTA

Basic information

species Physcomitrella patens
transcript PP1S55_304V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162258515|gb|FC434730.1|FC434730
EST:     GAGCACGAGCTGCTAATTGCAAATGAGGACCTCCGCCAGAAG                         CTTGCAGATGCTCAAGGGATTGCTGACGCAGTTACAGCTCGAGCGAACGTG
genomic: GAGCACGAGCTGCTAATTGCAAATGAGGACCTCCGCCAGAAGgtatttagct ... attgctgcagCTTGCAGATGCTCAAGGGATTGCTGACGCAGTTACAGCTCGAGCGAACGTG
EST: gi|37845624|gb|BJ603632.1|BJ603632
EST:     GAGCACGAGCTGCTAATTGCAAATGAGGACCTCCGCCAGAAAG                         CTTGCAGATGCTCAAGGGATTGCTGACGCAGTTACAGCTCGAGCGAACGT
genomic: GAGCACGAGCTGCTAATTGCAAATGAGGACCTCCGCCAG-AAGgtatttagct ... attgctgcagCTTGCAGATGCTCAAGGGATTGCTGACGCAGTTACAGCTCGAGCGAACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtccaatctatatattaattgaaacgggttaggttttctggtgtattgctgcagCTTGCAGATGCTCAAGGGATTGCTGACGCAGTTACAGCTCGAGCGAACGTGTCTGAAAGCCCTAGGCCCTTGACGAGCGCTCTCACACGAGACATCGTTA
             tattaat  putative branch site (score: 2)
     aatctatatattaatt  TA-rich tract