1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgtggaccacatgtgtgaggaagcctgcgttttgtgtgtgagtgtgtgtgttttagcgctggtcaaatgtcacactgagtgggattctttgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAACTATTCCCATTACCGGAACTGGAATCAACCCAGCAAGAAGCTTTGGCG
species | Physcomitrella patens |
transcript | PP1S55_301V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAEST: gi|162181259|gb|FC357041.1|FC357041
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAEST: gi|67720457|gb|BJ970716.1|BJ970716
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAEST: gi|100446330|gb|CJ970629.1|CJ970629
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGANTTGCGGTGEST: gi|162179614|gb|FC355256.1|FC355256
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTG
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAEST: gi|208352340|gb|DC906151.1|DC906151
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGATTTEST: gi|162181095|gb|FC357267.1|FC357267
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTT
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAEST: gi|208377070|gb|DC910844.1|DC910844
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATANGATTTGCGGTGTTCATGGTTCATTTGGCAEST: gi|100442334|gb|BY981358.1|BY981358
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAEST: gi|162158203|gb|FC335246.1|FC335246
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAEST: gi|100385906|gb|BY951100.1|BY951100
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: CTTCTCTGCCACAGACCCCAAGCGCCATGCTCGTGGAT-CTCATGTGCCG GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGGTCATTTGGCA
genomic: CTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTG-ATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
tgtgtgttttagcgctggtcaaatgtcacactgagtgggattctttgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAACTATTCCCATTACCGGAACTGGAATCAACCCAGCAAGAAGCTTTGGCG
ttctttgctcc CT-rich tract
attcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggaccacatgtgtgaggaagcctgcgttttgtgtgtgagtgtgtgtgttttagcgctggtcaaatgtcacactgagtgggattctttgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCAACTATTCCCATTACCGGAACTGGAATCAACCCAGCAAGAAGCTTTGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC