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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGAAATGCTGGCTGTGATGGGGTGGGACTTCTTGGCATCGCATGGGCTTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagggctgatcattacaagctcaaagtcgtcgatgagctctttggaagactagcagaggaccacagattgaatcccagtggtgaaccctccaga...

Basic information

species Physcomitrella patens
transcript PP1S55_301V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162246016|gb|FC424388.1|FC424388
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|162181259|gb|FC357041.1|FC357041
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100380353|gb|BY986670.1|BY986670
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18342754|gb|BJ174789.1|BJ174789
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|67720457|gb|BJ970716.1|BJ970716
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100448690|gb|CJ972989.1|CJ972989
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100446330|gb|CJ970629.1|CJ970629
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|162179614|gb|FC355256.1|FC355256
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208352340|gb|DC906151.1|DC906151
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100372068|gb|BY967690.1|BY967690
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|162181095|gb|FC357267.1|FC357267
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208377070|gb|DC910844.1|DC910844
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100442334|gb|BY981358.1|BY981358
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100385906|gb|BY951100.1|BY951100
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCGAAATGCTGGCTGTGATGGGGTGGGACTTCTTGGCATCGCATGGGCTTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagggctgatcattacaagctcaaagtcgtcgatgagctctttggaagactagcagaggaccacagattgaatcccagtggtgaaccctccaga

- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG