1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cagtccactctcttccagggttgcagctcagaaacttgaatcgcatagtggacgtcattgtgaaaccatcaccaacctattctaaatgtctcattcgtagGTTGGAGCTCGTCGATTTTAAAGAAGCTACAGAGAGCATGCGATGCATTGGACATGCTTCAGGTGGTGTTGCGAGCTTGACTGAGTTTCAGGAGCATGCA
species | Physcomitrella patens |
transcript | PP1S50_167V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGCAACATTACAGCAGCTGCTTGATCGGCAGCTGTCCACTACAGGGAG GTTGGAGCTCGTCGATTTTAAAGAAGCTACAGAGAGCATGCGATGCATTGGEST: gi|67575968|gb|BJ948792.1|BJ948792
genomic: GAAGCAACATTACAGCAGCTGCTTGATCGGCAGCTGTCCACTACAGGGAGgtatagagta ... tcattcgtagGTTGGAGCTCGTCGATTTTAAAGAAGCTACAGAGAGCATGCGATGCATTGG
EST: GAAGCAACATTACAGCAGCTGCTTGATCGGCAGCTGTCCACTACAGGGAG GTTGGAGCTCGTCGATTTTAAAGAAGCTACAGAGAGCATGCGATGCATTGGEST: gi|18355646|gb|BJ187705.1|BJ187705
genomic: GAAGCAACATTACAGCAGCTGCTTGATCGGCAGCTGTCCACTACAGGGAGgtatagagta ... tcattcgtagGTTGGAGCTCGTCGATTTTAAAGAAGCTACAGAGAGCATGCGATGCATTGG
EST: GAAGCAACATTACAGCAGCTGCTTGATCGGCAGCTGTCCACTACAGGGAG GTTGGAGCTCGTCGATTTTAAAGAAGCTACAGAGAGCATGCGATGCATTGG
genomic: GAAGCAACATTACAGCAGCTGCTTGATCGGCAGCTGTCCACTACAGGGAGgtatagagta ... tcattcgtagGTTGGAGCTCGTCGATTTTAAAGAAGCTACAGAGAGCATGCGATGCATTGG
tagtggacgtcattgtgaaaccatcaccaacctattctaaatgtctcattcgtagGTTGGAGCTCGTCGATTTTAAAGAAGCTACAGAGAGCATGCGATGCATTGGACATGCTTCAGGTGGTGTTGCGAGCTTGACTGAGTTTCAGGAGCATGCA
ttctaaa putative branch site (score: 2)
tctcattc putative PPT
tattctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtccactctcttccagggttgcagctcagaaacttgaatcgcatagtggacgtcattgtgaaaccatcaccaacctattctaaatgtctcattcgtagGTTGGAGCTCGTCGATTTTAAAGAAGCTACAGAGAGCATGCGATGCATTGGACATGCTTCAGGTGGTGTTGCGAGCTTGACTGAGTTTCAGGAGCATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA