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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggggtgttcctcctctttgtgggcctctatctcacgttgtgtcgtatccaactttactaatgtaaacacttcaatcttatagcataacagactaatatgagcatatttcggttacacttagtttgatatggcatgttgtgcatgcgacctgattctcatagaaatgcttccgtgtgtatctgtatgcagCGGCACCCCAAACATTGTTCTTAGCTACTTTTTTGTTGCTTCTTTCATTCTG

Basic information

species Physcomitrella patens
transcript PP1S50_164V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18345887|gb|BJ177930.1|BJ177930
EST:     ATGTAAAGGATGGGCATGCTTTTCAACAGCCTGCGGATTTATCCTGATTG                         CGGCACCCCAAACATTGTTCTTAGCTACTTTTTTGTTGCTTCTTTCATT
genomic: ATGTAAAGGATGGGCATGCTTTTCAACAGCCTGCGGATTTATCCTGATTGgtggggtgtt ... ctgtatgcagCGGCACCCCAAACATTGTTCTTAGCTACTTTTTTGTTGCTTCTTTCATT
EST: gi|100380203|gb|BY968899.1|BY968899
EST:     ATGTAAAGGATGGGCATGCTTTTCAACAGCCTGCGGATTTATCCTGATTG                         CGGCACCCCAGACATTGTTCTTAGCTACTTTTTTGTTGCTTCTTTCATTCT
genomic: ATGTAAAGGATGGGCATGCTTTTCAACAGCCTGCGGATTTATCCTGATTGgtggggtgtt ... ctgtatgcagCGGCACCCCAAACATTGTTCTTAGCTACTTTTTTGTTGCTTCTTTCATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtgcatgcgacctgattctcatagaaatgcttccgtgtgtatctgtatgcagCGGCACCCCAAACATTGTTCTTAGCTACTTTTTTGTTGCTTCTTTCATTCTG
            acctgat  putative branch site (score: 4)
                       atagaaat  TA-rich tract