Sequence
atgc intronic sequence ATGC exonic sequence...aatttggacctgcattttgacatgccactgtctaatgtggatggttccctacatcaagcaggatggtattgattgtttctttttggtgggctttggtcagCTGGTATTCTCATTGAGGACAAAAATTGGCCACCGTTTGTTCCAATTCTTCATCACGACATTGCTAATGACATACCAGCACATACTCAGCAACTACAGTA
Basic information
species | Physcomitrella patens |
transcript | PP1S50_114V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S50_114V6.4 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G169773_T02 (Zea mays), 3'ss of exon 4
---aatttggacctgcattttgacatgccactgtctaatgtggatggttccctacatcaagcaggatggtattgattgtttctttttggtgggctttggtcagCTGGTATTCTCATTGAGGACAAAAATTGGCCACCGTTTGTTCCAATTCTTCATCACGACATTGCTAATGACATACCAGCACATACTCAGCAACTACAGTA
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actaattaag--ctaatttgttgcttattgcc-catgctgcagtccttttacctgttaggtctgtcttttaataataataccctttttcctttcgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCATCATGACATTTCGAACGAGATACCAATTCACCTGCAAAGGATGCAGTA
upper sequence: PP1S50_114V6.4 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
aatttggacctgcattttgacatgccactgtct-aatgtggatggttccctacatcaagcaggatggtat-tgattgtttctttttggtgggctttggtcagCTGGTATTCTCATTGAGGACAAAAATTGGCCACCGTTTGTTCCAATTCTTCATCACGACATTGCTAATGACATACCAGCACATACTCAGCAACTACAGTA
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-gtttg--tctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattcttt------ctttgg-cagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67695428|gb|BJ955661.1|BJ955661EST: AGCTGCAGC-AAAG C-NGTANTCTCA-TGAGGAC-AAAANTGGCCACCG-TTGTTCCAA-TCTTC
genomic: AGCTGCAGCAAAAGgttggtagtg ... ctttggtcagCTGGTATTCTCATTGAGGACAAAAATTGGCCACCGTTTGTTCCAATTCTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccctacatcaagcaggatggtattgattgtttctttttggtgggctttggtcagCTGGTATTCTCATTGAGGACAAAAATTGGCCACCGTTTGTTCCAATTCTTCATCACGACATTGCTAATGACATACCAGCACATACTCAGCAACTACAGTA
tattgat putative branch site (score: 3)
tttcttttt TA-rich tract