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...tgagatttgctttttctcgtttcaaaagttgaagtggtgtaactttaaaaattatgtttccagtgtagccaatgaaaatgtgtggttttctgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAGAAGCTGCAGGTGGTGCTTTCAGAGCTGCTATATGATTTGACACATCTA
species | Physcomitrella patens |
transcript | PP1S50_114V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAG GAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAEST: gi|67701518|gb|BJ961751.1|BJ961751
genomic: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAGgtaatttatc ... tgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGA
EST: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAG GAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAEST: gi|208394706|gb|DC903962.1|DC903962
genomic: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAGgtaatttatc ... tgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGA
EST: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAG GAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAEST: gi|67695428|gb|BJ955661.1|BJ955661
genomic: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAGgtaatttatc ... tgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGA
EST: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAG GAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAEST: gi|208380999|gb|DC919881.1|DC919881
genomic: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAGgtaatttatc ... tgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGA
EST: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAG GAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAEST: gi|208375107|gb|DC944846.1|DC944846
genomic: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAGgtaatttatc ... tgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGA
EST: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAG GAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAEST: gi|162258284|gb|FC434683.1|FC434683
genomic: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAGgtaatttatc ... tgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGA
EST: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAG GAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAEST: gi|6167410|gb|AW145674.1|AW145674
genomic: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAGgtaatttatc ... tgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGA
EST: GTGGCGTCTTTCTCTCACATGAGTTGTTGTTGAGTATCTGGGTTATTAAG GAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGA
genomic: GTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAGgtaatttatc ... tgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGA
taaaaattatgtttccagtgtagccaatgaaaatgtgtggttttctgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAGAAGCTGCAGGTGGTGCTTTCAGAGCTGCTATATGATTTGACACATCTA
ttttctgtctccc CT-rich tract
attatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagatttgctttttctcgtttcaaaagttgaagtggtgtaactttaaaaattatgtttccagtgtagccaatgaaaatgtgtggttttctgtctcccagGAAGTGTATGATTACTTCAGAGGCTCCGGTAAAGCAGCGCAACTTAAGCGAGAAGCTGCAGGTGGTGCTTTCAGAGCTGCTATATGATTTGACACATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT