1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TAGGCTTGGTCAATTAGGTCAAATTTTAGGCATGAGTTCTAAGGAGGTTGCGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAGgtcagctttcacattcatccctgtaaaatgatttgtatgagtgcaagttcgaaatagcatacgaagcttgtgcgtattgcgctttatattccatctgtatttgtttggttttggccagatgtactattttcgaagtttctatgtttagctacttttcaaacatgtatattatgaatgcag
species | Physcomitrella patens |
transcript | PP1S509_22V6.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAG GTCATATTGGCCGATGGCCAGCTCAGCAAAGCTCGTATGGAACAACTCACGEST: gi|162154232|gb|FC330363.1|FC330363
genomic: CGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAGgtcagctttc ... atgaatgcagGTCATATTGGCCGATGGCCAGCTCAGCAAAGCTCGTATGGAACAACTCACG
EST: CGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAG GTCATATTGGCCGATGGCCAGCTCAGCAAAGCTCGTATGGAACAACTCACGEST: gi|162271803|gb|FC448936.1|FC448936
genomic: CGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAGgtcagctttc ... atgaatgcagGTCATATTGGCCGATGGCCAGCTCAGCAAAGCTCGTATGGAACAACTCACG
EST: CGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAG GTCATATTGGCCGATGGCCAGCTCAGCAAAGCTCGTATGGAACAACTCACGEST: gi|162262738|gb|FC439014.1|FC439014
genomic: CGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAGgtcagctttc ... atgaatgcagGTCATATTGGCCGATGGCCAGCTCAGCAAAGCTCGTATGGAACAACTCACG
EST: CGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAG GTCATATTGGCCGATGGCCAGCTCAGCAAAGCTCGTATGGAACAACTCACG
genomic: CGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAGgtcagctttc ... atgaatgcagGTCATATTGGCCGATGGCCAGCTCAGCAAAGCTCGTATGGAACAACTCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGGCTTGGTCAATTAGGTCAAATTTTAGGCATGAGTTCTAAGGAGGTTGCGGACGTCCACAAAGGTCTTGCAGAGCAAGCATTCAGCCAACAAGCAAAGgtcagctttcacattcatccctgtaaaatgatttgtatgagtgcaagttcgaaatagcatacgaagcttgtgcgtattgcgctttatattccatctgtatttgtttggttttggccagatgtactattttcgaagtttctatgtttagctacttttcaaacatgtatattatgaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG