1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catgtatagatttgtgttcatagctggaatgaatataaattgtgtgtgtgtgtgtgtttttttttctcttctcctcattctgtttcgtttgggttttcagGTATTGGACCTAGTTAATTCTAAACCAGAACGCACTGGACCTCTGAATTTGAATATCGTTGGCCACAAAGATAGGTCCTCATCTTGGGTTCAAGAAGAGG
species | Physcomitrella patens |
transcript | PP1S507_8V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCGACGACGCAGTGCGTTGGAAGGCATAGAAGCTCTGCTTCCTAAAGAG GTATTGGACCTAGTTAATTCTAAACCAGAACGCACTGGACCTCTGAATTTGEST: gi|100378984|gb|BY986516.1|BY986516
genomic: TTCGACGACGCAGTGCGTTGGAAGGCATAGAAGCTCTGCTTCCTAAAGAGgtgtgttccc ... gggttttcagGTATTGGACCTAGTTAATTCTAAACCAGAACGCACTGGACCTCTGAATTTG
EST: TTCGACGACGCAGTGCGTTGGAAGGCATAGAAGCTCTGCTTCCTAAAGAG GTATTGGACCTAGTTAATTCTAAACCAGAACGCACTGGACCTCTGAATTTG
genomic: TTCGACGACGCAGTGCGTTGGAAGGCATAGAAGCTCTGCTTCCTAAAGAGgtgtgttccc ... gggttttcagGTATTGGACCTAGTTAATTCTAAACCAGAACGCACTGGACCTCTGAATTTG
gtgtgtgtgtgtttttttttctcttctcctcattctgtttcgtttgggttttcagGTATTGGACCTAGTTAATTCTAAACCAGAACGCACTGGACCTCTGAATTTGAATATCGTTGGCCACAAAGATAGGTCCTCATCTTGGGTTCAAGAAGAGG
tgtttttttttctctt CT-rich tract
tttttttttctctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtatagatttgtgttcatagctggaatgaatataaattgtgtgtgtgtgtgtgtttttttttctcttctcctcattctgtttcgtttgggttttcagGTATTGGACCTAGTTAATTCTAAACCAGAACGCACTGGACCTCTGAATTTGAATATCGTTGGCCACAAAGATAGGTCCTCATCTTGGGTTCAAGAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG