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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcatggtcccgtgaaagcatttgtagataggtttcaccatcatttctgtccagcgatttacgtttctggtggtatctgttgtaatgtcttgtgtgcagGCTTAAATGGTGACCAATCATCTGTCTCG

Basic information

species Physcomitrella patens
transcript PP1S507_8V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18366946|gb|BJ199026.1|BJ199026
EST:     CGCCCCTATTTTGATCTTGGCGACAAGGACGTCGAACTTCGTATCAGCAG                         GCTTAAATGGTGACCAATCATCTGTCTCG
genomic: CGCCCCTATTTTGATCTTGGCGACAAGGACGTCGAACTTCGTATCAGCAGgtattactta ... ttgtgtgcagGCTTAAATGGTGACCAATCATCTGTCTCG
EST: gi|100390880|gb|BY989363.1|BY989363
EST:     CGCCCCTATTTTGATCTTGGCGACAAGGACGTCGAACTTCGTATCAGCAG                         GCTTAAATGGTGACCAATCATCTGTCTCG
genomic: CGCCCCTATTTTGATCTTGGCGACAAGGACGTCGAACTTCGTATCAGCAGgtattactta ... ttgtgtgcagGCTTAAATGGTGACCAATCATCTGTCTCG
EST: gi|100378984|gb|BY986516.1|BY986516
EST:     CGCCCCTATTTTGATCTTGGCGACAAGGACGTCGAACTTCGTATCAGCAG                         GCTTAAATGGTGACCAATCATCTGTCTCG
genomic: CGCCCCTATTTTGATCTTGGCGACAAGGACGTCGAACTTCGTATCAGCAGgtattactta ... ttgtgtgcagGCTTAAATGGTGACCAATCATCTGTCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtccagcgatttacgtttctggtggtatctgttgtaatgtcttgtgtgcagGCTTAAATGGTGACCAATCATCTGTCTCG
                                   ttgtaat  TA-rich tract