1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ataatttatagcgtcttggataacattcctgagtatacgttcactagtatgtacggttgtttttaacaacctgaactatctttgtgggtatcgttcgcagATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGTGTCGTGGAACCAGGTGATGACGAGTTGAATGAAGAGGATCTGACATAAG
species | Physcomitrella patens |
transcript | PP1S506_3V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACG ATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGTEST: gi|37838770|gb|BJ596778.1|BJ596778
genomic: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACGgtgagctact ... tcgttcgcagATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGT
EST: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACG ATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGTEST: gi|208398716|gb|DC916239.1|DC916239
genomic: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACGgtgagctact ... tcgttcgcagATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGT
EST: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACG ATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGTEST: gi|208386122|gb|DC949033.1|DC949033
genomic: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACGgtgagctact ... tcgttcgcagATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGT
EST: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACG ATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGTEST: gi|208393535|gb|DC949697.1|DC949697
genomic: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACGgtgagctact ... tcgttcgcagATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGT
EST: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACG ATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGT
genomic: TAAGGCATGTTGTGAGCTCAAGTCATATCATTACTCATTTAGATCACACGgtgagctact ... tcgttcgcagATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGT
agtatgtacggttgtttttaacaacctgaactatctttgtgggtatcgttcgcagATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGTGTCGTGGAACCAGGTGATGACGAGTTGAATGAAGAGGATCTGACATAAG
ttttaac putative branch site (score: 5)
ttgtttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatttatagcgtcttggataacattcctgagtatacgttcactagtatgtacggttgtttttaacaacctgaactatctttgtgggtatcgttcgcagATTGTAAGGTTGGCTAAGCAGTTGCCAAAGGGTGATGTTAAAGCTGCAAGTGTCGTGGAACCAGGTGATGACGAGTTGAATGAAGAGGATCTGACATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT