1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcccggtatctttcgtcattctgactggatcaatcctaacttatacgtttactgaattactttcagcgtgattgggtagcttacatagtgttctctgcagGGCAGTGGAAGATGAGAGGTCGGAAATTGCAGTCAGGATGTACTTGGATGCTTGTGCGATGCTTGAGGAAGATGGTCGCGAACAGATGGCCTTCGATAAT
species | Physcomitrella patens |
transcript | PP1S506_3V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTCTGCA-TGCGGGAAAGTACAGCCAAGTGCTGATGTGCTTAGCAGAGGTGCCCGEST: gi|208386122|gb|DC949033.1|DC949033
genomic: TTTTCTGCATTGCGGGAAAGTACAGCCAAGTGCTGATGTGCTTAGCAGA-------Ggtgcccggta ... ttct
EST: TTTT-TGCATTGCGGGAAAGTACAGCCAAGTGCTGATGTGCTTAGCAGAGGTGCCCGEST: gi|208393535|gb|DC949697.1|DC949697
genomic: TTTTCTGCATTGCGGGAAAGTACAGCCAAGTGCTGATGTGCTTAGCAGA-------Ggtgcccggta ... ttct
EST: AAGTACAGCCAAGTGNTGATGTGCTTAGCAGAGGTGEST: gi|208393535|gb|DC949697.1|DC949697
genomic: AAGTACAGCCAAGTGCTGATGTGCTTAGCAGA---Ggtgcccggta ... ttctctgc
EST: AAGTACAGCCAAGTGNTGATGTGCTTAGCAGAGGTGEST: gi|208393535|gb|DC949697.1|DC949697
genomic: AAGTACAGCCAAGTGCTGATGTGCTTAGCAGA---Ggtgcccggta ... ttctctgc
EST: AAGTACAGCCAAGTGNTGATGTGCTTAGCAGAGGTGEST: gi|208393535|gb|DC949697.1|DC949697
genomic: AAGTACAGCCAAGTGCTGATGTGCTTAGCAGA---Ggtgcccggta ... ttctctgc
EST: AAGTACAGCCAAGTGNTGATGTGCTTAGCAGAGGTGEST: gi|208393535|gb|DC949697.1|DC949697
genomic: AAGTACAGCCAAGTGCTGATGTGCTTAGCAGA---Ggtgcccggta ... ttctctgc
EST: AAGTACAGCCAAGTGNTGATGTGCTTAGCAGAGGTG
genomic: AAGTACAGCCAAGTGCTGATGTGCTTAGCAGA---Ggtgcccggta ... ttctctgc
cgtttactgaattactttcagcgtgattgggtagcttacatagtgttctctgcagGGCAGTGGAAGATGAGAGGTCGGAAATTGCAGTCAGGATGTACTTGGATGCTTGTGCGATGCTTGAGGAAGATGGTCGCGAACAGATGGCCTTCGATAAT
agcttac putative branch site (score: 6)
tgttctct putative PPT
aattacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcccggtatctttcgtcattctgactggatcaatcctaacttatacgtttactgaattactttcagcgtgattgggtagcttacatagtgttctctgcagGGCAGTGGAAGATGAGAGGTCGGAAATTGCAGTCAGGATGTACTTGGATGCTTGTGCGATGCTTGAGGAAGATGGTCGCGAACAGATGGCCTTCGATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG