1 5' 3' | 2 5' 3' | 3 5' 3' |
...gattgtcaagaagagctactatatagcagcgtttatggtgaggttggagagaatgtcggagttgtgggaggtaacagatgtgtctggcgtggtgatgcagGTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGAAAGAGCAATTACACTGACATG
species | Physcomitrella patens |
transcript | PP1S505_2V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTCGACTGAAGA GTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGAAAGAGEST: gi|18374486|gb|BJ206064.1|BJ206064
genomic: AACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTCGACTGAAGAgtacgtttcg ... ggtgatgcagGTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGAAAGAG
EST: AACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTCGACTGAAGA GTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGAAAGAGEST: gi|67701998|gb|BJ962231.1|BJ962231
genomic: AACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTCGACTGAAGAgtacgtttcg ... ggtgatgcagGTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGAAAGAG
EST: AACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTCGACTGAAGA GTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGAEST: gi|18345127|gb|BJ177168.1|BJ177168
genomic: AACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTCGACTGAAGAgtacgtttcg ... ggtgatgcagGTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGA
EST: AACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTCGACTGAAGA GTACNAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAANAAAGAG
genomic: AACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTCGACTGAAGAgtacgtttcg ... ggtgatgcagGTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGAAAGAG
ggagagaatgtcggagttgtgggaggtaacagatgtgtctggcgtggtgatgcagGTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGAAAGAGCAATTACACTGACATG
aggtaac putative branch site (score: 19)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgtcaagaagagctactatatagcagcgtttatggtgaggttggagagaatgtcggagttgtgggaggtaacagatgtgtctggcgtggtgatgcagGTACGAGAAGTATCATGCTATGCACGGAGGCGACAAAGAAGCAAGAAAGAGCAATTACACTGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA