1 5' 3' | 2 5' 3' | 3 5' 3' |
CTGCTTTCCACGCCCCACTCTGTTTCATCGACCGAGAGTTGTGTGGCACTTCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcacattgtcctcgacctgtcccagttccgttcgatacgtccgtggatccgagtgcggtgttggttgtttgttgttttgcagatgtatgaggagg...
species | Physcomitrella patens |
transcript | PP1S505_2V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG GTTTGTGGGTGEST: gi|18359833|gb|BJ191894.1|BJ191894
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTG
EST: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATTEST: gi|18374486|gb|BJ206064.1|BJ206064
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATTEST: gi|67701998|gb|BJ962231.1|BJ962231
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATTEST: gi|18345127|gb|BJ177168.1|BJ177168
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: TCACTGCAGCAGCTCTTTGCGTGGNCCTGTTTCCCTCGGCGTCCACAGAG GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTTTCCACGCCCCACTCTGTTTCATCGACCGAGAGTTGTGTGGCACTTCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcacattgtcctcgacctgtcccagttccgttcgatacgtccgtggatccgagtgcggtgttggttgtttgttgttttgcagatgtatgaggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC