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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGCTCAAACAAGAAGACCAGGCATGTGCTGCCAAGTGGATTCGTTAAGTTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatacgattgcttccttcattgaggatcaattaggactggtaaccctcttttgttaattgccatcattttggggcttcaggctttgaatgagaaa...

Basic information

species Physcomitrella patens
transcript PP1S505_19V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18345989|gb|BJ178032.1|BJ178032
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18338677|gb|BJ170701.1|BJ170701
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162237696|gb|FC413311.1|FC413311
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162224012|gb|FC400370.1|FC400370
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67691939|gb|BJ952172.1|BJ952172
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37826999|gb|BJ585011.1|BJ585011
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37832666|gb|BJ590678.1|BJ590678
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67718078|gb|BJ968337.1|BJ968337
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18355721|gb|BJ187780.1|BJ187780
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67568749|gb|BJ941573.1|BJ941573
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37828878|gb|BJ586890.1|BJ586890
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18326572|gb|BJ158571.1|BJ158571
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18371587|gb|BJ203189.1|BJ203189
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAANGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162237697|gb|FC413312.1|FC413312
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67507424|gb|BJ940307.1|BJ940307
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37851769|gb|BJ609777.1|BJ609777
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162223162|gb|FC398792.1|FC398792
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18355472|gb|BJ187531.1|BJ187531
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18354720|gb|BJ186778.1|BJ186778
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162212082|gb|FC388192.1|FC388192
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162228316|gb|FC404070.1|FC404070
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162235064|gb|FC410991.1|FC410991
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67691490|gb|BJ951723.1|BJ951723
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37824478|gb|BJ582544.1|BJ582544
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|15320292|gb|BI488092.1|BI488092
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18360448|gb|BJ192510.1|BJ192510
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162274966|gb|FC450617.1|FC450617
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67578678|gb|BJ950845.1|BJ950845
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18345427|gb|BJ177470.1|BJ177470
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|7648250|gb|AW739233.1|AW739233
EST:     TTTGTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162273172|gb|FC449504.1|FC449504
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37837654|gb|BJ595662.1|BJ595662
EST:     AGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: AGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37832416|gb|BJ590428.1|BJ590428
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162225171|gb|FC402211.1|FC402211
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67727836|gb|BJ978095.1|BJ978095
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|7583868|gb|AW699770.1|AW699770
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37829587|gb|BJ587599.1|BJ587599
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67726574|gb|BJ976833.1|BJ976833
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18341932|gb|BJ173967.1|BJ173967
EST:     TTTTTGGTTCACAACGTGTAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|7583681|gb|AW699588.1|AW699588
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162273173|gb|FC449505.1|FC449505
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37821003|gb|BJ579069.1|BJ579069
EST:     TTTTTGGTTCACAACGTGTAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18334560|gb|BJ166577.1|BJ166577
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162205672|gb|FC381887.1|FC381887
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162224023|gb|FC400381.1|FC400381
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162230802|gb|FC406433.1|FC406433
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67508272|gb|BJ941141.1|BJ941141
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|67719568|gb|BJ969827.1|BJ969827
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162223163|gb|FC398793.1|FC398793
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGCGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|37825105|gb|BJ583171.1|BJ583171
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|162257342|gb|FC433425.1|FC433425
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
EST: gi|18355407|gb|BJ187466.1|BJ187466
EST:     TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAG                         GAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC
genomic: TTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 42

ACGGCTCAAACAAGAAGACCAGGCATGTGCTGCCAAGTGGATTCGTTAAGTTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatac ... gatgatgcagGAAGTACAGTGCTGAAATTGCACACAACGTTTCCACTCTGAAAAGGAAGGCCATCGTGGAGCGTGCAGCCCAGCTGAACATTGCACTGACCAATGGAAGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGGCTCAAACAAGAAGACCAGGCATGTGCTGCCAAGTGGATTCGTTAAGTTTTTGGTTCACAACGTGAAGGACGTCGAGCTTCTGCTGATGCACAACAGgtaaatatacgattgcttccttcattgaggatcaattaggactggtaaccctcttttgttaattgccatcattttggggcttcaggctttgaatgagaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT