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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGTCAAGATGGTGACCCCTCTCATCAAGCGCGATGTCATCAAGAAGCGCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgacttccctctttcgaaggaccactaatcaatagaactcttctgttgtgctatcgattcttgcagtaaatacttagattggatctcataatta...

Basic information

species Physcomitrella patens
transcript PP1S505_19V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18345989|gb|BJ178032.1|BJ178032
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18338677|gb|BJ170701.1|BJ170701
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162237696|gb|FC413311.1|FC413311
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162224012|gb|FC400370.1|FC400370
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|37826999|gb|BJ585011.1|BJ585011
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|37832666|gb|BJ590678.1|BJ590678
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGGTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|67718078|gb|BJ968337.1|BJ968337
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18355721|gb|BJ187780.1|BJ187780
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGGTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|67568749|gb|BJ941573.1|BJ941573
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|37828878|gb|BJ586890.1|BJ586890
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18326572|gb|BJ158571.1|BJ158571
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18371587|gb|BJ203189.1|BJ203189
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162237697|gb|FC413312.1|FC413312
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|67507424|gb|BJ940307.1|BJ940307
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|37851769|gb|BJ609777.1|BJ609777
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162223162|gb|FC398792.1|FC398792
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18355472|gb|BJ187531.1|BJ187531
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18354720|gb|BJ186778.1|BJ186778
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162212082|gb|FC388192.1|FC388192
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162228316|gb|FC404070.1|FC404070
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162235064|gb|FC410991.1|FC410991
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|37824478|gb|BJ582544.1|BJ582544
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|15320292|gb|BI488092.1|BI488092
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18360448|gb|BJ192510.1|BJ192510
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162274966|gb|FC450617.1|FC450617
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18345427|gb|BJ177470.1|BJ177470
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|7648250|gb|AW739233.1|AW739233
EST:     GCGTCGAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162273172|gb|FC449504.1|FC449504
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|37832416|gb|BJ590428.1|BJ590428
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCNCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162225171|gb|FC402211.1|FC402211
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|67727836|gb|BJ978095.1|BJ978095
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGGGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|7583868|gb|AW699770.1|AW699770
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|37829587|gb|BJ587599.1|BJ587599
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|67726574|gb|BJ976833.1|BJ976833
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18341932|gb|BJ173967.1|BJ173967
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|7583681|gb|AW699588.1|AW699588
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162273173|gb|FC449505.1|FC449505
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|37821003|gb|BJ579069.1|BJ579069
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18334560|gb|BJ166577.1|BJ166577
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162205672|gb|FC381887.1|FC381887
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162224023|gb|FC400381.1|FC400381
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162230802|gb|FC406433.1|FC406433
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|67508272|gb|BJ941141.1|BJ941141
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|67719568|gb|BJ969827.1|BJ969827
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGGGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162223163|gb|FC398793.1|FC398793
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|37825105|gb|BJ583171.1|BJ583171
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|162257342|gb|FC433425.1|FC433425
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
EST: gi|18355407|gb|BJ187466.1|BJ187466
EST:     GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAG                         ACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT
genomic: GCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 44

GCTTGTCAAGATGGTGACCCCTCTCATCAAGCGCGATGTCATCAAGAAGCGCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgac ... tttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTTAAGGGCACTACTTTGATGCCCAACATCGGTTACGGCTCAAACAAGAAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTGTCAAGATGGTGACCCCTCTCATCAAGCGCGATGTCATCAAGAAGCGCGTCAAGAAGTTTAAGCGCATGCAGTCTGACCGCAAGATTTGCGTGAAGgtactgcgacttccctctttcgaaggaccactaatcaatagaactcttctgttgtgctatcgattcttgcagtaaatacttagattggatctcataatta

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA