1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttgttgtgaagatatctcctagaagtgcaatatgggtagatattagcaggattctctcgttcttttctcaactgtttgggtttatctctggtgttacagCTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAAAGAAAGTGGTCTTCTCTTTTGCGCATCCTTTCTTTTCGTTCAGAGTGCA
species | Physcomitrella patens |
transcript | PP1S504_13V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAG CTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAAEST: gi|162191322|gb|FC367104.1|FC367104
genomic: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAGgtatttttca ... ggtgttacagCTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAA
EST: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAG CTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAAEST: gi|67701130|gb|BJ961363.1|BJ961363
genomic: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAGgtatttttca ... ggtgttacagCTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAA
EST: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAG CTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAAEST: gi|100357858|gb|BY946609.1|BY946609
genomic: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAGgtatttttca ... ggtgttacagCTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAA
EST: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAG CTGAAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCCACCAATAAEST: gi|208351930|gb|DC917963.1|DC917963
genomic: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAGgtatttttca ... ggtgttacagCTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAA
EST: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAG CTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAAEST: gi|67693859|gb|BJ954092.1|BJ954092
genomic: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAGgtatttttca ... ggtgttacagCTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAA
EST: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAG CTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAA
genomic: CAGTCTGGTCAGCGGACGTCCTCGCTTTCTTCGCCATGTATACTTGGAAGgtatttttca ... ggtgttacagCTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAA
agcaggattctctcgttcttttctcaactgtttgggtttatctctggtgttacagCTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAAAGAAAGTGGTCTTCTCTTTTGCGCATCCTTTCTTTTCGTTCAGAGTGCA
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttgtgaagatatctcctagaagtgcaatatgggtagatattagcaggattctctcgttcttttctcaactgtttgggtttatctctggtgttacagCTGGAGTGGCTTGGAAACAGTGACAACAAGGCTAATGATTCCAACCAATAAAGAAAGTGGTCTTCTCTTTTGCGCATCCTTTCTTTTCGTTCAGAGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA