1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaacctgggagtccatggtgtcaaatggttgttgagtttgtgcagctgggtagtttaattggtcgtctctttgttgagttcatggcacattgaggtgattttgtatgtccttgcgtatcctgagtgtaaggaggtagtcgttaggacagtagtgaaaaccaaggtgttgtttgatttttaagGTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAGAACAAGAACCCAGCGCAGCCGGGCACAATGCTGTACACCATCTTTGAAG
species | Physcomitrella patens |
transcript | PP1S504_13V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAG GTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAGEST: gi|67570574|gb|BJ943398.1|BJ943398
genomic: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAGgtgaacctgg ... gatttttaagGTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAG
EST: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAG GTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAGEST: gi|67578260|gb|BJ950427.1|BJ950427
genomic: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAGgtgaacctgg ... gatttttaagGTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAG
EST: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAG GTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAGEST: gi|208350368|gb|DC906070.1|DC906070
genomic: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAGgtgaacctgg ... gatttttaagGTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAG
EST: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAG GTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAGEST: gi|67693859|gb|BJ954092.1|BJ954092
genomic: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAGgtgaacctgg ... gatttttaagGTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAG
EST: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAG GTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAG
genomic: AAGTTGCAGCAACGGACGTGAAGGTGGACCTCGAGAAAGACATTAGCAAGgtgaacctgg ... gatttttaagGTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAG
aaggaggtagtcgttaggacagtagtgaaaaccaaggtgttgtttgatttttaagGTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAGAACAAGAACCCAGCGCAGCCGGGCACAATGCTGTACACCATCTTTGAAG
gtttgat putative branch site (score: 1)
ttttt CT-rich tract
ttgtttgatttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacctgggagtccatggtgtcaaatggttgttgagtttgtgcagctgggtagtttaattggtcgtctctttgttgagttcatggcacattgaggtgattttgtatgtccttgcgtatcctgagtgtaaggaggtagtcgttaggacagtagtgaaaaccaaggtgttgtttgatttttaagGTCGTGCGGAAGACAGCAGCTACTTTTGCCCCTCGCGCTTCATCTGCTAAGAACAAGAACCCAGCGCAGCCGGGCACAATGCTGTACACCATCTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG