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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGAGCTGCGGAAATGGGCTGACATTAATTTGCCCAAGTATCTTCTTCTAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatgttggcttatttatttgtttatttttcctagagatcagcttcaggccgatctccaccctgaaagattttttaccatttcaatctccttatc...

Basic information

species Physcomitrella patens
transcript PP1S500_5V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162152753|gb|FC329759.1|FC329759
EST:     TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTTTCGGAAATGCTTTTAAG                         TTTTTGAACGCCCTGATCCAAGATGAAAGCAAACCCCCTCAGAAAAGTTTA
genomic: TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatg ... ttatgaacagTTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
EST: gi|162208045|gb|FC384227.1|FC384227
EST:     TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAG                         TTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
genomic: TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatg ... ttatgaacagTTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
EST: gi|162237769|gb|FC413384.1|FC413384
EST:     TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAG                         TTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
genomic: TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatg ... ttatgaacagTTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
EST: gi|37829105|gb|BJ587117.1|BJ587117
EST:     TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAG                         TTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
genomic: TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatg ... ttatgaacagTTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
EST: gi|162236706|gb|FC413385.1|FC413385
EST:     TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAG                         TTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
genomic: TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatg ... ttatgaacagTTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
EST: gi|162158638|gb|FC335031.1|FC335031
EST:     TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAG                         TTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
genomic: TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatg ... ttatgaacagTTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
EST: gi|7286684|gb|AW599171.1|AW599171
EST:     GCGCAGTGGTCGTCTCGGAAATGCTTTTAAG                         TTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
genomic: GCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatg ... ttatgaacagTTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
EST: gi|162161459|gb|FC337639.1|FC337639
EST:     TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAG                         TTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
genomic: TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatg ... ttatgaacagTTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA
EST: gi|162208044|gb|FC384226.1|FC384226
EST:     TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAG                         TTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACTTCAGAAAAGTTTA
genomic: TAACTGTGAAACGAGAAAAGCGCAGTGGTCGTCTCGGAAATGCTTTTAAGgtaaagcatg ... ttatgaacagTTTTTGAACGACCTGATCCAAGATGAAAGCAAACCACCTCAGAAAAGTTTA