1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tggcagagcagatgttggaagattgtaagtctttttggagtagatttctctcttttaaaattaggatgtagtcttaacgtgcgtttgtgagcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTATACAAAAAGGGTCTTGCTTTGATTCAGCTGGAAGAGGATCAAACAACCC
species | Physcomitrella patens |
transcript | PP1S500_5V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCG AAGGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTAEST: gi|162237769|gb|FC413384.1|FC413384
genomic: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCGgtaacttctc ... gcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTA
EST: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCG AAGGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTAEST: gi|37829105|gb|BJ587117.1|BJ587117
genomic: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCGgtaacttctc ... gcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTA
EST: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCG AAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTAEST: gi|162236706|gb|FC413385.1|FC413385
genomic: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCGgtaacttctc ... gcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTA
EST: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCG AAGGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTAEST: gi|162158638|gb|FC335031.1|FC335031
genomic: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCGgtaacttctc ... gcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTA
EST: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCG AAGGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTAEST: gi|162161459|gb|FC337639.1|FC337639
genomic: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCGgtaacttctc ... gcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTA
EST: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCG AAGGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTAEST: gi|162208044|gb|FC384226.1|FC384226
genomic: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCGgtaacttctc ... gcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTA
EST: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCG AAGGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTA
genomic: TCGCAAGATATTTCTCAATGAAAAACGAGTCTGAAGATGCGAATGCTGCGgtaacttctc ... gcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTA
ttctctcttttaaaattaggatgtagtcttaacgtgcgtttgtgagcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTATACAAAAAGGGTCTTGCTTTGATTCAGCTGGAAGAGGATCAAACAACCC
tcttaac putative branch site (score: 6)
ttttaaaattaggat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcagagcagatgttggaagattgtaagtctttttggagtagatttctctcttttaaaattaggatgtagtcttaacgtgcgtttgtgagcattattagAAAGTGCGAAAGGAGATGGAAAAGAAACGAGATTCATTGGCAGATGCTTTATACAAAAAGGGTCTTGCTTTGATTCAGCTGGAAGAGGATCAAACAACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT