1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtttgtgtttcgttcactttcaagcggtttgcttgtttgtctacctagggattcagacaaaattcgtttgttcttatcatatagagcggtcgttaaataaggattttatgtgctgcataactttctagccacttatgaagcatggtgtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGCGCATTTCGGGGACGTGGCGGTGGCAGAAGTGCTGGCGGTGCAGGTGCT
species | Physcomitrella patens |
transcript | PP1S4_67V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATC TATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGEST: gi|162275225|gb|FC451201.1|FC451201
genomic: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATCgtaagtttgt ... gtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAG
EST: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATC TATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGEST: gi|67693139|gb|BJ953372.1|BJ953372
genomic: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATCgtaagtttgt ... gtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAG
EST: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATC TATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGEST: gi|208386074|gb|DC956590.1|DC956590
genomic: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATCgtaagtttgt ... gtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAG
EST: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATC TATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGEST: gi|67727816|gb|BJ978075.1|BJ978075
genomic: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATCgtaagtttgt ... gtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAG
EST: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATC TATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGEST: gi|37824585|gb|BJ582651.1|BJ582651
genomic: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATCgtaagtttgt ... gtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAG
EST: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATC TATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGEST: gi|208380155|gb|DC927434.1|DC927434
genomic: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATCgtaagtttgt ... gtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAG
EST: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATC TATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGEST: gi|208373986|gb|DC944719.1|DC944719
genomic: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATCgtaagtttgt ... gtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAG
EST: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATC TATGCCTTTTACTCGAGGACCTGGGTCTGATCGAGGCAGAAGTGGTAGCAG
genomic: GGAGCCATGGCAATGGTTGCTAGTCGAGGACGTCCTGTTTCTTCGTCATCgtaagtttgt ... gtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAG
gattttatgtgctgcataactttctagccacttatgaagcatggtgtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGCGCATTTCGGGGACGTGGCGGTGGCAGAAGTGCTGGCGGTGCAGGTGCT
gcataac putative branch site (score: 16)
tgttttt putative PPT
ataacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgtgtttcgttcactttcaagcggtttgcttgtttgtctacctagggattcagacaaaattcgtttgttcttatcatatagagcggtcgttaaataaggattttatgtgctgcataactttctagccacttatgaagcatggtgtttttgtagTATGCCTTTTACTCGAGGACCTGGATCTGATCGAGGCAGAGGTGGTAGCAGCGCATTTCGGGGACGTGGCGGTGGCAGAAGTGCTGGCGGTGCAGGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT