1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagacagattttctataatgcgatcgaattgttttcatgtctgcatgcacttcctatgtgtaaataccctgtagatgctcctctgagcaggtcgctcgtgtcctggctcttttaactacaacagccctatctttttgtccagattgctatctcattgatttactgcgctgtattatcagGGAACTGCGGAGGTGGTGTTCACTAGGAAACCCGATGCTGTCAGTGCGATGAAGAGATATAACAATGTTCAACTCGATGGAAAACCTATGAAGATTGAGA
species | Physcomitrella patens |
transcript | PP1S4_67V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGATTTAAAAAGATGCTCTATTAATTATGATCGAAGTGGTCGTTCGAAG GGAACTGCGGAGGTGGTGTTCACTAGGAAACCCGATGCTGTCAGTGCGATGEST: gi|67727816|gb|BJ978075.1|BJ978075
genomic: GTGATTTAAAAAGATGCTCTATTAATTATGATCGAAGTGGTCGTTCGAAGgtgagacaga ... gtattatcagGGAACTGCGGAGGTGGTGTTCACTAGGAAACCCGATGCTGTCAGTGCGATG
EST: GTGATTTAAAAAGATGCTCTATTAATTATGATCGAAGTGGTCGTTCGAAG GGAACTGCGGAGGTGGTGTTCACTAGGAAACCCGATGCTGTCAGTGCGATGEST: gi|208380155|gb|DC927434.1|DC927434
genomic: GTGATTTAAAAAGATGCTCTATTAATTATGATCGAAGTGGTCGTTCGAAGgtgagacaga ... gtattatcagGGAACTGCGGAGGTGGTGTTCACTAGGAAACCCGATGCTGTCAGTGCGATG
EST: GTGATTTAAAAAGATGCTCTATTAATTATGATCGAAGTGGTCGTTCGAAG GGAACTGCGGAGGTGGTGTTCACTAGGAAACCCGATGCTGTCAGTGCGATG
genomic: GTGATTTAAAAAGATGCTCTATTAATTATGATCGAAGTGGTCGTTCGAAGgtgagacaga ... gtattatcagGGAACTGCGGAGGTGGTGTTCACTAGGAAACCCGATGCTGTCAGTGCGATG
ccctatctttttgtccagattgctatctcattgatttactgcgctgtattatcagGGAACTGCGGAGGTGGTGTTCACTAGGAAACCCGATGCTGTCAGTGCGATGAAGAGATATAACAATGTTCAACTCGATGGAAAACCTATGAAGATTGAGA
cattgat putative branch site (score: 10)
attgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagacagattttctataatgcgatcgaattgttttcatgtctgcatgcacttcctatgtgtaaataccctgtagatgctcctctgagcaggtcgctcgtgtcctggctcttttaactacaacagccctatctttttgtccagattgctatctcattgatttactgcgctgtattatcagGGAACTGCGGAGGTGGTGTTCACTAGGAAACCCGATGCTGTCAGTGCGATGAAGAGATATAACAATGTTCAACTCGATGGAAAACCTATGAAGATTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA