1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtgttactgtttacagtgcaatcttttcttggatcgtcaagattctgatactgttatggccatcttgtctgatggatgagtttgcttgcatgtaaaacagCATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGTTACGATTGGTAATGCTGTATGGTGGGAGTGTCAGCATAGAGGGGAAAG
species | Physcomitrella patens |
transcript | PP1S4_62V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACG CATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGTEST: gi|162191494|gb|FC367185.1|FC367185
genomic: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACGgtaagtaatt ... tgtaaaacagCATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGT
EST: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACG CATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGTEST: gi|162224069|gb|FC400635.1|FC400635
genomic: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACGgtaagtaatt ... tgtaaaacagCATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGT
EST: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACG CATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGTEST: gi|162192881|gb|FC369875.1|FC369875
genomic: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACGgtaagtaatt ... tgtaaaacagCATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGT
EST: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACG CATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGTEST: gi|162161404|gb|FC337610.1|FC337610
genomic: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACGgtaagtaatt ... tgtaaaacagCATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGT
EST: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACG CATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGTEST: gi|100382413|gb|BY969102.1|BY969102
genomic: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACGgtaagtaatt ... tgtaaaacagCATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGT
EST: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACG CATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGT
genomic: AGATTGTCACGGATGGCGCCTCAATCAGTTTCACGGGCTTTTATCGGACGgtaagtaatt ... tgtaaaacagCATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGT
tgatactgttatggccatcttgtctgatggatgagtttgcttgcatgtaaaacagCATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGTTACGATTGGTAATGCTGTATGGTGGGAGTGTCAGCATAGAGGGGAAAG
atgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttactgtttacagtgcaatcttttcttggatcgtcaagattctgatactgttatggccatcttgtctgatggatgagtttgcttgcatgtaaaacagCATACTTGCGGATCCTGGATTTCTATACAAGCTAGCTTTTGACGAGGTAGTTACGATTGGTAATGCTGTATGGTGGGAGTGTCAGCATAGAGGGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG