1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgactcacatttctctgttttcaatgaactcgtcgaaagctgcaccgtgattgacagattctttagcagtctaaagcgggatttctgtttgacattgcacattagtgttaatatttcctaatcgtcactacgatctgtttggtattgtcacagGGGCTTTTGCTGGTCTTGGTTATTTGTCACTCTACTTCGCTGGGAAGTTGAGTCTCTTCGACAGGAGAGGCTATACATCAAGAGTTTTCTGGGTCCTGCT
species | Physcomitrella patens |
transcript | PP1S4_56V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGGGCTT-CCGTGATGCTTACAAAAGTTTTCCGAGCGGCCACGTCTCAT GGGCTTTTGCTGGTCTTGGT-ATTTGTCACTCTACTTCGCTGGGGAGTTGEST: gi|162268064|gb|FC443534.1|FC443534
genomic: AGGG-CTTTCCGTGATGCTTACAAAAGTTTCCCGAGCGGCCACGTCTCATgtaagtgact ... attgtcacagGGGCTTTTGCTGGTCTTGGTTATTTGTCACTCTACTTCGCTGGGAAGTTG
EST: GAGGGCTTTCCGTGATGCTTACAAAAGTTTCCCGAGCGGCCACGTCTCAT GGGCTTTTGCTGGTCTTGGTTATTTGTCACTCTACTTCGCTGGGAAGTTGAEST: gi|162278048|gb|FC453867.1|FC453867
genomic: GAGGGCTTTCCGTGATGCTTACAAAAGTTTCCCGAGCGGCCACGTCTCATgtaagtgact ... attgtcacagGGGCTTTTGCTGGTCTTGGTTATTTGTCACTCTACTTCGCTGGGAAGTTGA
EST: GAGGGCTTTCCGTGATGCTTACAAAAGTTTCCCGAGCGGCCACGTCTCAT GGGCTTTTGCTGGTCTTGGTTATTTGTCACTCTACTTCGCTGGGAAGTTGA
genomic: GAGGGCTTTCCGTGATGCTTACAAAAGTTTCCCGAGCGGCCACGTCTCATgtaagtgact ... attgtcacagGGGCTTTTGCTGGTCTTGGTTATTTGTCACTCTACTTCGCTGGGAAGTTGA
acattagtgttaatatttcctaatcgtcactacgatctgtttggtattgtcacagGGGCTTTTGCTGGTCTTGGTTATTTGTCACTCTACTTCGCTGGGAAGTTGAGTCTCTTCGACAGGAGAGGCTATACATCAAGAGTTTTCTGGGTCCTGCT
tcctaat putative branch site (score: 15)
ttaatatttcctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgactcacatttctctgttttcaatgaactcgtcgaaagctgcaccgtgattgacagattctttagcagtctaaagcgggatttctgtttgacattgcacattagtgttaatatttcctaatcgtcactacgatctgtttggtattgtcacagGGGCTTTTGCTGGTCTTGGTTATTTGTCACTCTACTTCGCTGGGAAGTTGAGTCTCTTCGACAGGAGAGGCTATACATCAAGAGTTTTCTGGGTCCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG