1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTCATCATTCCACCGTTCCATCGTTTTGTGAATGAACCCATGATGGAAGATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGGgtacgtagccaagtctctcttcattaggaacattcattcatacgcgcagttggttccgcaaatattgttctcgttataatttgacctcgtttttcgatgctctgtatattcagtacacatggtacttaccttattgttggatgccttatcag
species | Physcomitrella patens |
transcript | PP1S4_56V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGG GTTGTTGCTGTGGTCCTGCCATTCCTCATTTTCGTTGTCCTTTTCATCAAGEST: gi|100378508|gb|BY968634.1|BY968634
genomic: ATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGGgtacgtagcc ... gccttatcagGTTGTTGCTGTGGTCCTGCCATTCCTCATTTTCGTTGTCCTTTTCATCAAG
EST: ATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGG GGTGTTGCTGTGGTCCTGCCATTCCTCATTTTCGTTGTCCTTTTCATCAAGEST: gi|100385363|gb|BY950955.1|BY950955
genomic: ATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGGgtacgtagcc ... gccttatcagGTTGTTGCTGTGGTCCTGCCATTCCTCATTTTCGTTGTCCTTTTCATCAAG
EST: ATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGAAGTGTTGGG GGTGTTGCTGTGGTCCTGCCATCCCTCATTTTTCGT-GTCCTTTTTCATCAEST: gi|162268064|gb|FC443534.1|FC443534
genomic: ATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGGgtacgtagcc ... gccttatcagGTTGTTGCTGTGGTCCTGCCATTCCTCATTTT-CGTTGTCCTTTT-CATCA
EST: ATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGG GTTGTTGCTGTGGTCCTGCCATTCCTCATTTTCGTTGTCCTTTTCATCAAGEST: gi|100431017|gb|BY959985.1|BY959985
genomic: ATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGGgtacgtagcc ... gccttatcagGTTGTTGCTGTGGTCCTGCCATTCCTCATTTTCGTTGTCCTTTTCATCAAG
EST: ATCTGCGGTACCCCAGGAAGC-AGAGACTGTCCCGACATGGAGTGTTGGG GTTGTTGCTGTGGTCC
genomic: ATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGGgtacgtagcc ... gccttatcagGTTGTTGCTGTGGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCATCATTCCACCGTTCCATCGTTTTGTGAATGAACCCATGATGGAAGATCTGCGGTACCCCAGGAAGCCAGAGACTGTCCCGACATGGAGTGTTGGGgtacgtagccaagtctctcttcattaggaacattcattcatacgcgcagttggttccgcaaatattgttctcgttataatttgacctcgtttttcgatgctctgtatattcagtacacatggtacttaccttattgttggatgccttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA