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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gccatggaatttaggcacttgtttaaagaatccgtcatcaattcgcgatgctgattattctgcaattagttctgataaagtttcgttgtgttgcagAGAAACAATGCAACATATTTGAAGGCAAGTGGATCGAGAACCACTCCGAACCTCTTTACCAAAACGAAACCTGTCCGTTTTTGTCGCAAGGACAAAACTG

Basic information

species Physcomitrella patens
transcript PP1S424_5V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67717045|gb|BJ967304.1|BJ967304
EST:     TGGGGAGGTGAAGCACGTTTTGCAGCTGCCTTCGCAGCAAG-A--G--AA                         A----CAATGCAACATATTTGAAGGCAAGTGGATCGAGAACCACTCCGAAC
genomic: TGGGGAGGTGAAGCACGTTTTGCAGCTGCCTTCGCAGCAAGGAAAGCTAAgccatggaat ... tgtgttgcagAGAAACAATGCAACATATTTGAAGGCAAGTGGATCGAGAACCACTCCGAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgcgatgctgattattctgcaattagttctgataaagtttcgttgtgttgcagAGAAACAATGCAACATATTTGAAGGCAAGTGGATCGAGAACCACTCCGAACCTCTTTACCAAAACGAAACCTGTCCGTTTTTGTCGCAAGGACAAAACTG
                            ttctgat  putative branch site (score: 3)
                                       tttcgtt  putative PPT
                                 ataaagttt  TA-rich tract