1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgacttatttgggtagtcaacactgcatattcctactgatgcatcatcctcacactgaggatacgaagatactgaaccatatctggggttccacttgcagTGGCGAGATATTGGATGTGGAAGTTGTGGACGGAGGTCTTATATGCTCAAGTGGTGTTGCCCTGGAGGCTATGGGAGACAAGAACGATGACTGTTATGTA
species | Physcomitrella patens |
transcript | PP1S423_15V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGTGCAGAAGGATTTGGACATTGAAAAAGTGAAGGCTGTCTTCCCATA TGGCGAGATATTGGATGTGGAAGTTGTGGACGGAGGTCTTATATGCTCAAGEST: gi|208379524|gb|DC911135.1|DC911135
genomic: TCTGTGCAGAAGGATTTGGACATTGAAAAAGTGAAGGCTGTCTTCCCATAgtaagtcacg ... ccacttgcagTGGCGAGATATTGGATGTGGAAGTTGTGGACGGAGGTCTTATATGCTCAAG
EST: TCTGTGCAGAAGGATTTGGACATTGAAAAAGTGAAGGCTGTCTTCCCATA TGGCGAGATATTGGATEST: gi|208358465|gb|DC930597.1|DC930597
genomic: TCTGTGCAGAAGGATTTGGACATTGAAAAAGTGAAGGCTGTCTTCCCATAgtaagtcacg ... ccacttgcagTGGCGAGATATTGGAT
EST: TCTGTGCAGAAGGATTTGGACATTGAAAAAGTGAAGGCTGTCTTCCCATA TGGCGAGATATTGGATGTGGAAGTTGTGGACGGAGGTCTTATATGCTCAAG
genomic: TCTGTGCAGAAGGATTTGGACATTGAAAAAGTGAAGGCTGTCTTCCCATAgtaagtcacg ... ccacttgcagTGGCGAGATATTGGATGTGGAAGTTGTGGACGGAGGTCTTATATGCTCAAG
atcctcacactgaggatacgaagatactgaaccatatctggggttccacttgcagTGGCGAGATATTGGATGTGGAAGTTGTGGACGGAGGTCTTATATGCTCAAGTGGTGTTGCCCTGGAGGCTATGGGAGACAAGAACGATGACTGTTATGTA
tcctcac putative branch site (score: 7)
ttccactt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacttatttgggtagtcaacactgcatattcctactgatgcatcatcctcacactgaggatacgaagatactgaaccatatctggggttccacttgcagTGGCGAGATATTGGATGTGGAAGTTGTGGACGGAGGTCTTATATGCTCAAGTGGTGTTGCCCTGGAGGCTATGGGAGACAAGAACGATGACTGTTATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - ctgcata
- - - - - - - - - - - - - - - - - - tgatgca