1 5' 3' | 2 5' 3' | 3 5' 3' |
...tccttttttttaaactccacttgcaacacatgcaatccttgtttgtcttttatcttttgactcgctggaccatgtacgaacctaattttttttcgatcagGTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAGGAGTCCCTAGCTCTGTGCAGAAGGATTTGGACATTGAAAAAGTGAAGGC
species | Physcomitrella patens |
transcript | PP1S423_15V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGTAAAAACGCCATCAGTTCAAATTCTATACCTGCGTTCCGAACTG GTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAGEST: gi|208379524|gb|DC911135.1|DC911135
genomic: AGCCTGTAAAAACGCCATCAGTTCAAATTCTATACCTGCGTTCCGAACTGgtagttgata ... tttcgatcagGTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAG
EST: AGCCTGTAAAAACGCCATCAGTTCAAATTCTATACCTGCGTTCCGAACTG GTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAGEST: gi|100413942|gb|BY975044.1|BY975044
genomic: AGCCTGTAAAAACGCCATCAGTTCAAATTCTATACCTGCGTTCCGAACTGgtagttgata ... tttcgatcagGTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAG
EST: AGCCTGTAAAAACGCCATCAGTTCAAATTCTATACCTGCGTTCCGAACTG GTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAGEST: gi|208358465|gb|DC930597.1|DC930597
genomic: AGCCTGTAAAAACGCCATCAGTTCAAATTCTATACCTGCGTTCCGAACTGgtagttgata ... tttcgatcagGTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAG
EST: AGCCTGTAAAAACGCCATCAGTTCAAATTCTATACCTGCGTTCCGAACTG GTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAG
genomic: AGCCTGTAAAAACGCCATCAGTTCAAATTCTATACCTGCGTTCCGAACTGgtagttgata ... tttcgatcagGTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAG
tcttttatcttttgactcgctggaccatgtacgaacctaattttttttcgatcagGTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAGGAGTCCCTAGCTCTGTGCAGAAGGATTTGGACATTGAAAAAGTGAAGGC
acctaat putative branch site (score: 12)
cctaattttttttc CT-rich tract
aacctaatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttttttttaaactccacttgcaacacatgcaatccttgtttgtcttttatcttttgactcgctggaccatgtacgaacctaattttttttcgatcagGTGCGCTTCCTGGCATAACTTATCAGCAAATGAAATTGAAGGTGAAACTAGGAGTCCCTAGCTCTGTGCAGAAGGATTTGGACATTGAAAAAGTGAAGGC
- - - - - - - - -cacttgc
- - - - - - - - - - - - - cacatgc