1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTTATGAACACCGCTAATCTCATCCGGATTGAAGTTAACAAGGCTTTGCACATCGCTCGTACCGTTGCGCTTGGAAAGGACTTCAAGCTGTTTTTATTGgtaagtgcttggcacgttagtagtgaactgggctttcaagcgcgaggtcttgtcgtggacgtcgggtatggtttgtggtaggtcttcatttttccgacca...
species | Physcomitrella patens |
transcript | PP1S421_1V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACATCGCTCGTACCGTTGCGCTTGGAAAGGACTTCAAGCTGTTTTTATTG GTGGTAGCTTCCTTGTATGTTGTGTCGATTGTCGGCTCCTGGTTCAACTTGEST: gi|100416134|gb|BY957093.1|BY957093
genomic: ACATCGCTCGTACCGTTGCGCTTGGAAAGGACTTCAAGCTGTTTTTATTGgtaagtgctt ... tgccttgcagGTGGTAGCTTCCTTGTATGTTGTGTCGATTGTCGGCTCCTGGTTCAACTTG
EST: CATCGCTCGTACCGTTTGCGCTTGGAAAGGACTTCAAGCTGGTTTTATTG GTGGTAGCTTCCEST: gi|208394184|gb|DC929671.1|DC929671
genomic: CATCGCTCGTACCGTT-GCGCTTGGAAAGGACTTCAAGCTGTTTTTATTGgtaagtgctt ... tgccttgcagGTGGTAGCTTCC
EST: ACATCGCTCGTACCGTTGCGCTTGGAAAGGACTTCAAGCTGTTTTTATTG GTGGTAGCTTCCTTGTATGTTGTGTCGATTGTCGGCTCCTGGTTCAACTTGEST: gi|208369800|gb|DC944208.1|DC944208
genomic: ACATCGCTCGTACCGTTGCGCTTGGAAAGGACTTCAAGCTGTTTTTATTGgtaagtgctt ... tgccttgcagGTGGTAGCTTCCTTGTATGTTGTGTCGATTGTCGGCTCCTGGTTCAACTTG
EST: ACATCGCTCGTACCGTTGCGCTTGGAAAGGACTTCAAGCTGTTTTTATTG GTGGTAGCTTCCTTGTATGTTGTGTCGATTGTCGGCTCCTGGTTCAACTTG
genomic: ACATCGCTCGTACCGTTGCGCTTGGAAAGGACTTCAAGCTGTTTTTATTGgtaagtgctt ... tgccttgcagGTGGTAGCTTCCTTGTATGTTGTGTCGATTGTCGGCTCCTGGTTCAACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTATGAACACCGCTAATCTCATCCGGATTGAAGTTAACAAGGCTTTGCACATCGCTCGTACCGTTGCGCTTGGAAAGGACTTCAAGCTGTTTTTATTGgtaagtgcttggcacgttagtagtgaactgggctttcaagcgcgaggtcttgtcgtggacgtcgggtatggtttgtggtaggtcttcatttttccgacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT