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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agacttttgaagtgttttttcttttaattgattctagtctcttatcgaatggtccgtttactggcgttccatggattaatttgttgttgcttggacgtagCTGCTGATTCGGCTCTGTGGAGAGATAAGTATCTCTCCGGTGGAACTTTGTTTGGATCCACAGCCATCTGGTACCTTCTAGAGAAATCTGGCTACACATT

Basic information

species Physcomitrella patens
transcript PP1S421_1V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360492|gb|BJ192555.1|BJ192555
EST:     GTTCTTGACGAAGGACAAGACCGTTTACCAGCTCCTGGGTGGAGGCCGAG                         CTGCTGATTCGGCTCTGTGGAGAGATAAGTATCTCTCCGGTGGAACTTTGT
genomic: GTTCTTGACGAAGGACAAGACCGTTTACCAGCTCCTGGGTGGAGGCCGAGgtaggacgga ... ttggacgtagCTGCTGATTCGGCTCTGTGGAGAGATAAGTATCTCTCCGGTGGAACTTTGT
EST: gi|100416134|gb|BY957093.1|BY957093
EST:     GTTCTTGACGAAGGACAAGACCGTTTACCAGCTCCTGGGTGGAGGCCGAG                         CTGCTGATTCGGCTCTGTGGAGAGATAAGTATCTCTCCGGTGGAACTTTGT
genomic: GTTCTTGACGAAGGACAAGACCGTTTACCAGCTCCTGGGTGGAGGCCGAGgtaggacgga ... ttggacgtagCTGCTGATTCGGCTCTGTGGAGAGATAAGTATCTCTCCGGTGGAACTTTGT
EST: gi|208394184|gb|DC929671.1|DC929671
EST:     GTTCTTGACGAAGGACAAGACCGTTTACCAGCTCCTGGGTGGAGGCCGAG                         CTGCTGATTCGGCTCTGTGGAGAGATAAGTATCTCTCCGGTGGAACTTTGT
genomic: GTTCTTGACGAAGGACAAGACCGTTTACCAGCTCCTGGGTGGAGGCCGAGgtaggacgga ... ttggacgtagCTGCTGATTCGGCTCTGTGGAGAGATAAGTATCTCTCCGGTGGAACTTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaatggtccgtttactggcgttccatggattaatttgttgttgcttggacgtagCTGCTGATTCGGCTCTGTGGAGAGATAAGTATCTCTCCGGTGGAACTTTGTTTGGATCCACAGCCATCTGGTACCTTCTAGAGAAATCTGGCTACACATT
                            gattaat  putative branch site (score: 3)
                             attaatttgttgtt  TA-rich tract