1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgcgttcactgtttattgatcgtagttatcagcactatggactcagtttaccttactgcatttatttcatgttgaacttgcatctgataactgttgcagGTGTTCTGCCCAAGTACTTTAGTTCAGAGTGGTCTTTTTCACAGTTCCGCGTGCCTGAGGAGACCAAGGCTATAGTAGCATTCGGGTCTATGAAGAATAC
species | Physcomitrella patens |
transcript | PP1S41_98V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATGTCATCTCCATCTGCAAATGCGGGCTCATCACTTTCCTTCATGAAGG GTGTTCTGCCCAAGTACTTTAGTTCAGAGTGGTCTTTTTCACAGTTCCGCGEST: gi|162161042|gb|FC337534.1|FC337534
genomic: AATGTCATCTCCATCTGCAAATGCGGGCTCATCACTTTCCTTCATGAAGGgtgagcgtgt ... actgttgcagGTGTTCTGCCCAAGTACTTTAGTTCAGAGTGGTCTTTTTCACAGTTCCGCG
EST: AATGTCATCTCCATCTGCAAATGCGGGCTCATCACTTTCCTTCATGAAGG GTGTTCTGCCCAAGTACTTTAGTTCAGAGTGGTCTTTTTCACAGTTCCGCGEST: gi|162161043|gb|FC337535.1|FC337535
genomic: AATGTCATCTCCATCTGCAAATGCGGGCTCATCACTTTCCTTCATGAAGGgtgagcgtgt ... actgttgcagGTGTTCTGCCCAAGTACTTTAGTTCAGAGTGGTCTTTTTCACAGTTCCGCG
EST: AATGTCATCTCCATCTGCAAATGCGGGCTCATCACTTTCCTTCATGAAGG GTGTTCTGCCCAAGTACTTTAGTTCAGAGTGGTCTTTTTCACAGTTCCGCG
genomic: AATGTCATCTCCATCTGCAAATGCGGGCTCATCACTTTCCTTCATGAAGGgtgagcgtgt ... actgttgcagGTGTTCTGCCCAAGTACTTTAGTTCAGAGTGGTCTTTTTCACAGTTCCGCG
agtttaccttactgcatttatttcatgttgaacttgcatctgataactgttgcagGTGTTCTGCCCAAGTACTTTAGTTCAGAGTGGTCTTTTTCACAGTTCCGCGTGCCTGAGGAGACCAAGGCTATAGTAGCATTCGGGTCTATGAAGAATAC
tgataac putative branch site (score: 21)
atttatttcatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcgttcactgtttattgatcgtagttatcagcactatggactcagtttaccttactgcatttatttcatgttgaacttgcatctgataactgttgcagGTGTTCTGCCCAAGTACTTTAGTTCAGAGTGGTCTTTTTCACAGTTCCGCGTGCCTGAGGAGACCAAGGCTATAGTAGCATTCGGGTCTATGAAGAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa