1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgatattttactgcaggacgaagtgccgatttattatggattaaaagtggggtgtccagctgttaaagttctaactgtgcagtgaccttgtttgtttcagACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCATCTCCGAATGGATCTTTCCTCACCGCCCCTCCTAGTGCCGCCATCGGCAC
species | Physcomitrella patens |
transcript | PP1S41_98V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCGTCAATTACATGTCTCCACACTCATCTGGTTGGGAGGATTGCAAG ACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCATEST: gi|100435668|gb|BY961030.1|BY961030
genomic: TCTTCGTCAATTACATGTCTCCACACTCATCTGGTTGGGAGGATTGCAAGgtttgttcca ... tttgtttcagACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCAT
EST: TCTTCGTCAATTACATGTCTCCACACTCATCTGGTTGGGAGGATTGCAAG ACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCATEST: gi|18365343|gb|BJ197417.1|BJ197417
genomic: TCTTCGTCAATTACATGTCTCCACACTCATCTGGTTGGGAGGATTGCAAGgtttgttcca ... tttgtttcagACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCAT
EST: TCTTCGTCAATTACATGTCTCCACACTCATCTGGTTGGGAGGATTGCAAG ACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCATEST: gi|100359600|gb|BY947064.1|BY947064
genomic: TCTTCGTCAATTACATGTCTCCACACTCATCTGGTTGGGAGGATTGCAAGgtttgttcca ... tttgtttcagACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCAT
EST: TCTTCGTCAATTACATGTCTCCACACTCATCTGGTTGGGAGGATTGCAAG ACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCAT
genomic: TCTTCGTCAATTACATGTCTCCACACTCATCTGGTTGGGAGGATTGCAAGgtttgttcca ... tttgtttcagACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCAT
agtggggtgtccagctgttaaagttctaactgtgcagtgaccttgtttgtttcagACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCATCTCCGAATGGATCTTTCCTCACCGCCCCTCCTAGTGCCGCCATCGGCAC
ttctaac putative branch site (score: 6)
ccttgttt putative PPT
ttaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatattttactgcaggacgaagtgccgatttattatggattaaaagtggggtgtccagctgttaaagttctaactgtgcagtgaccttgtttgtttcagACAATTATTGACCTCTTTAGTTTCTGAGGATTGAGCATCACGCCGCTTCATCTCCGAATGGATCTTTCCTCACCGCCCCTCCTAGTGCCGCCATCGGCAC
- - - - tactgca