1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacttaagtaacaagtggtgctttgacttcaaatacagtattcgttttgcaaccctcgctacagacgtacaagtcaatccatgtatggatattttcatagctacatctttccactatcgatccgaatgcattttaccattgtcttttgattgcactgattatttggttcctttgtttctcagTTGTTACATCAGGACTCGCGGTTTGAAGATGCAGAAGAAGAGGATTCTGATGAGAAAGGCAGCTGAAATTCTGAAGCAGGAAGCACCCAGTTTTGTCAAC
species | Physcomitrella patens |
transcript | PP1S41_93V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGCACCCGATAGCAGTAATGTTGATCGGAATATAGACCTTGCAGAG TTGTTACATCAGGACTCGCGGTTTGAAGATGCAGAAGAAGAGGATTCTGATEST: gi|67699883|gb|BJ960116.1|BJ960116
genomic: GAGCTGCACCCGATAGCAGTAATGTTGATCGGAATATAGACCTTGCAGAGgtaacttaag ... tgtttctcagTTGTTACATCAGGACTCGCGGTTTGAAGATGCAGAAGAAGAGGATTCTGAT
EST: GAGCTGCACCCGATAGCAGTAATGTTGATCGGAATATAGACCTTGCAGAG TTGTTACATCAGGACTCGCGGTTTGAAGATGCAGAAGAAGAGGATTCTGATEST: gi|15261235|gb|BI436545.1|BI436545
genomic: GAGCTGCACCCGATAGCAGTAATGTTGATCGGAATATAGACCTTGCAGAGgtaacttaag ... tgtttctcagTTGTTACATCAGGACTCGCGGTTTGAAGATGCAGAAGAAGAGGATTCTGAT
EST: GAGCTGCACCCGATAGCAGTAATGTTGATCGGAATATAGACCTTGCAGAG TTGTTACATCAGGACTCGCGGTTTGAAGATGCAGAAGAAGAGGATTCTGAT
genomic: GAGCTGCACCCGATAGCAGTAATGTTGATCGGAATATAGACCTTGCAGAGgtaacttaag ... tgtttctcagTTGTTACATCAGGACTCGCGGTTTGAAGATGCAGAAGAAGAGGATTCTGAT
gcattttaccattgtcttttgattgcactgattatttggttcctttgtttctcagTTGTTACATCAGGACTCGCGGTTTGAAGATGCAGAAGAAGAGGATTCTGATGAGAAAGGCAGCTGAAATTCTGAAGCAGGAAGCACCCAGTTTTGTCAAC
cactgat putative branch site (score: 11)
ttcctttgtttctc putative PPT
tgattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttaagtaacaagtggtgctttgacttcaaatacagtattcgttttgcaaccctcgctacagacgtacaagtcaatccatgtatggatattttcatagctacatctttccactatcgatccgaatgcattttaccattgtcttttgattgcactgattatttggttcctttgtttctcagTTGTTACATCAGGACTCGCGGTTTGAAGATGCAGAAGAAGAGGATTCTGATGAGAAAGGCAGCTGAAATTCTGAAGCAGGAAGCACCCAGTTTTGTCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC