1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaagcctgatttcggatttacgctaaaagcctcgtgacttatgtgtcaaattatgacagtctcgtttttccttacagaaacgtttttgttttgaatacagAACAAGAAGGTGAAGCAGATTGGGTCTTCGACGAGGATGAAGTGATGGGAAATATCATCGGAGCTGCACCCGATAGCAGTAATGTTGATCGGAATATAGA
species | Physcomitrella patens |
transcript | PP1S41_93V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGATTGCGCTCTGTTGAACCCCGATGCAGAAGTTG AACAAGAAGGTGAAGCAGATTGGGTCTTCGACGAGGATGAAGTGATGGGAAEST: gi|15261235|gb|BI436545.1|BI436545
genomic: GCGATTGCGCTCTGTTGAACCCCGATGCAGAAGTTGgtatgtgaac ... ttgaatacagAACAAGAAGGTGAAGCAGATTGGGTCTTCGACGAGGATGAAGTGATGGGAA
EST: GTTTCAAGTGCTACGCGATTGCGCTCTGTTGAACCCCGATGCAGAAGTTG AACAAGAAGGTGAAGCAGATTGGGTCTTCGACGAGGATGAAGTGATGGGAA
genomic: GTTTCAAGTGCTACGCGATTGCGCTCTGTTGAACCCCGATGCAGAAGTTGgtatgtgaac ... ttgaatacagAACAAGAAGGTGAAGCAGATTGGGTCTTCGACGAGGATGAAGTGATGGGAA
tcaaattatgacagtctcgtttttccttacagaaacgtttttgttttgaatacagAACAAGAAGGTGAAGCAGATTGGGTCTTCGACGAGGATGAAGTGATGGGAAATATCATCGGAGCTGCACCCGATAGCAGTAATGTTGATCGGAATATAGA
tccttac putative branch site (score: 3)
tttttgtttt putative PPT
tttttgttttgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcctgatttcggatttacgctaaaagcctcgtgacttatgtgtcaaattatgacagtctcgtttttccttacagaaacgtttttgttttgaatacagAACAAGAAGGTGAAGCAGATTGGGTCTTCGACGAGGATGAAGTGATGGGAAATATCATCGGAGCTGCACCCGATAGCAGTAATGTTGATCGGAATATAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC