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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCACTGGGTCCCGAGGTCAGGTGACCCAAGTTCGTGTTAAGTTTCTGGATGATCAAAATCGACTCATTATGCGCAATGTGAAGGGGCCAGTGCGTGAAGgtacagagtcctggaacttttgtcatgttcttctctaacccaccatggtgtgatctccatcatattgaagcttcttttatattcaaggatctttcagggg...

Basic information

species Physcomitrella patens
transcript PP1S41_71V6.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S41_71V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ30111 (Selaginella moellendorffii), 5'ss of exon 2
CGCACTGGGTCCCGAGGTCAGGTGACCCAAGTTCGTGTTAAGTTTCTGGATGATCAAAATCGACTCATTATGCGCAATGTGAAGGGGCCAGTGCGTGAAGgtacagagtcctggaacttttgtcatgttcttctctaacccaccatggtgtgatctccatcatattgaagcttcttttatattcaaggatctttcagggg
 | || || || || || || ||||||||||| || || ||||| ||||| || || ||||| ||||| ||||||||||| ||||||||  | || |||||||   ||  || ||             || |||| | |  | |   |  ||||||        |||  |||  |||  | |  |               
AGGACGGGATCTCGCGGGCAAGTGACCCAAGTCCGGGTGAAGTTCCTGGACGACCAGAATCGTCTCATCATGCGCAATGTCAAGGGGCCGATCCGCGAAGgta---agctctcga-------------tcctctcgatcgaatcgaagattgatct--------ttggggctaatttcttgtgtag--------------

upper sequence: PP1S41_71V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ08290 (Selaginella moellendorffii), 5'ss of exon 2
CGCACTGGGTCCCGAGGTCAGGTGACCCAAGTTCGTGTTAAGTTTCTGGATGATCAAAATCGACTCATTATGCGCAATGTGAAGGGGCCAGTGCGTGAAGgtacagagtcctggaacttttgtcatgttcttctctaacccaccatggtgtgatctccatcatattgaagcttcttttatattcaaggatctttcagggg
 | || || || || || || ||||||||||| || || ||||| ||||| || || ||||| ||||| ||||||||||| ||||||||  | || |||||||   ||  || ||             || |||| | |  | |   |  ||||||       |    |  ||||| | ||                   
AGGACGGGATCTCGCGGGCAAGTGACCCAAGTCCGGGTGAAGTTCCTGGACGACCAGAATCGTCTCATCATGCGCAATGTCAAGGGGCCGATCCGCGAAGgta---agctctcga-------------tcctctcgatcgaatcgaagattgatctttggggca----aatttcttgtgtag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19776618|gb|BQ039094.1|BQ039094
EST:     TGATCAAAATCGACTCATTATGCGCAATGTGAAGGGGCCAGTGCGTGAAG                         GTGACATCCTGACTCTCCTGGAGTCTGAGAGAGAGGCTAGGAGGCTGCGGT
genomic: TGATCAAAATCGACTCATTATGCGCAATGTGAAGGGGCCAGTGCGTGAAGgtacagagtc ... ttgtatacagGTGACATCCTGACTCTCCTGGAGTCTGAGAGAGAGGCTAGGAGGCTGCGGT