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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcgacggttttgatcttctgactcttttgacggctagtttcttatgtaaatgtatatttgtatctgctatatcaatttgttcaggattctgccgtgaagCTGGCTATTGTAATGAAGGTGATTGGTCGCACTGGGTCCCGAGGTCAGGTGACCCAAGTTCGTGTTAAGTTTCTGGATGATCAAAATCGACTCATTATGC

Basic information

species Physcomitrella patens
transcript PP1S41_71V6.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S41_71V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA03G36580.1 (Glycine max), 3'ss of exon 1
-----------tgcgacggttttgatct-tctg--actcttttgacggctagtttcttatgtaaatgtatatttgtatctgctatatca-atttgttcaggat----tctgccgtgaagCTGGCTATTGTAATGAAGGTGATTGGTCGCACTGGGTCCCGAGGTCAGGTGACCCAAGTTCGTGTTAAGTTTCTGGATGATCAAAATCGACTCATTATGC
              |    |  |||| | ||||  | |  ||        |  ||  | |   | | |    |  || | | |  ||    ||||  ||||||    |||   |||||||  ||  ||||  | || || || ||||| ||||| ||| |||| ||||||||||| ||| | || |||||||||||||||                   
tgcatttggaagatgttattcctgatttatctgtcattgattcattaaacacatttgttttccactttcatctcataacggtttgattgtgtttgagcagGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTAATGGGTCGTACTGGATCCAGAGGACAGGTGACCCAGGTTAGAGTGAAGTTTCTGGATGAT-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19776618|gb|BQ039094.1|BQ039094
EST:     GCCCCGTCTGCACCCGCTGTACACGTGCTTCCCTCCGCCTTACCATCATG                         CTGGCTATTGTAATGAAGGTGATTGGTCGCACTGGGTCCCGAGGTCAGGTG
genomic: GCCCCGTCTGCACCCGCTGTACACGTGCTTCCCTCCGCCTTACCATCATGgttcgcgccc ... tgccgtgaagCTGGCTATTGTAATGAAGGTGATTGGTCGCACTGGGTCCCGAGGTCAGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaatgtatatttgtatctgctatatcaatttgttcaggattctgccgtgaagCTGGCTATTGTAATGAAGGTGATTGGTCGCACTGGGTCCCGAGGTCAGGTGACCCAAGTTCGTGTTAAGTTTCTGGATGATCAAAATCGACTCATTATGC
                                          ttctgcc  CT-rich tract
     atgtatatttgtat  TA-rich tract