1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tagctcataaaatttgttcttttcttaataattcaagagtcttgtttcatgaaagtagtctattgtcattcagtcgctgattcttttttgatacctgcagGAGAGAAGGGTTTAGGCCGCATTACAAAGAAACCCCTACACTTCAAAGACACTATATTTCACCGAATCATTCCAGGATTTATGGCACAA
species | Physcomitrella patens |
transcript | PP1S41_63V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTATACAGATGTGCCCAAAACTGCAGAAAATTTTCGAGCGCTCTGCACAG GAGAGAAGGGTTTAGGCCGCATTACAAAGAAACCCCTACACTTCAAAGACAEST: gi|67577860|gb|BJ950027.1|BJ950027
genomic: TTATACAGATGTGCCCAAAACTGCAGAAAATTTTCGAGCGCTCTGCACAGgtacatcttt ... atacctgcagGAGAGAAGGGTTTAGGCCGCATTACAAAGAAACCCCTACACTTCAAAGACA
EST: TTATACAGATGTGCCCAAAACTGCAGAAAATTNTCGAGCGCTCTGCACAG GAGAGAAGGGTTTAGGCCGCATTACANAGAAACCCCTACACTTCAAAGACA
genomic: TTATACAGATGTGCCCAAAACTGCAGAAAATTTTCGAGCGCTCTGCACAGgtacatcttt ... atacctgcagGAGAGAAGGGTTTAGGCCGCATTACAAAGAAACCCCTACACTTCAAAGACA
ttcatgaaagtagtctattgtcattcagtcgctgattcttttttgatacctgcagGAGAGAAGGGTTTAGGCCGCATTACAAAGAAACCCCTACACTTCAAAGACACTATATTTCACCGAATCATTCCAGGATTTATGGCACAA
ttttgat putative branch site (score: 14)
attcttttttgata TA-rich tract