1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctggttggctaggttgattactgtcggcatgctaaagttggtttgtgtccgctgtaattcatgttcattttaggttctgattatgttaattattttacagATAAAGTTGGAACGAAACAATCAACCACAACAGCTGAAAAATCTGGCCAGAGAGCAGGTGCCAAACTTGTTGGAAAACAAATAGAAATCGATATGAAGGT
species | Physcomitrella patens |
transcript | PP1S41_63V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAG ATAAAGTTGGAACGAAACAATCAACCACAACAGCTGAAAAATCTGGCCAGAEST: gi|162279729|gb|FC455637.1|FC455637
genomic: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAGgcacgtacga ... tattttacagATAAAGTTGGAACGAAACAATCAACCACAACAGCTGAAAAATCTGGCCAGA
EST: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAG ATAAAGTTGGAACGAAACAATCAACCACAACAGCTGAAAAATCTGGCCAGAEST: gi|162258107|gb|FC433889.1|FC433889
genomic: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAGgcacgtacga ... tattttacagATAAAGTTGGAACGAAACAATCAACCACAACAGCTGAAAAATCTGGCCAGA
EST: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAG ATAAAGTTGGAACGAAACAATCAACCACAACAGCTGAAAAATCTGGCCAGAEST: gi|162167024|gb|FC342486.1|FC342486
genomic: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAGgcacgtacga ... tattttacagATAAAGTTGGAACGAAACAATCAACCACAACAGCTGAAAAATCTGGCCAGA
EST: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAGG CEST: gi|162167024|gb|FC342486.1|FC342486
genomic: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGA-Ggcacgtacga ... tattttacag-
EST: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAGG CEST: gi|162167024|gb|FC342486.1|FC342486
genomic: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGA-Ggcacgtacga ... tattttacag-
EST: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAGG CEST: gi|162167024|gb|FC342486.1|FC342486
genomic: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGA-Ggcacgtacga ... tattttacag-
EST: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGAGG C
genomic: TGACGTGAGTGCACGTGCGGCGAAGAGAACCCAGAAGACACAAATTCGA-Ggcacgtacga ... tattttacag-
tgtccgctgtaattcatgttcattttaggttctgattatgttaattattttacagATAAAGTTGGAACGAAACAATCAACCACAACAGCTGAAAAATCTGGCCAGAGAGCAGGTGCCAAACTTGTTGGAAAACAAATAGAAATCGATATGAAGGT
tgttaat putative branch site (score: 5)
ttatttt CT-rich tract
ttctgattatgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggttggctaggttgattactgtcggcatgctaaagttggtttgtgtccgctgtaattcatgttcattttaggttctgattatgttaattattttacagATAAAGTTGGAACGAAACAATCAACCACAACAGCTGAAAAATCTGGCCAGAGAGCAGGTGCCAAACTTGTTGGAAAACAAATAGAAATCGATATGAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG