1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcttcacacgtccccttgtttcagttatttcagtttctgaggtggttagcaagtttcctagatgttgtactctgagttctgttcttttatttcttctaaatagaggtctatcatcaaatttgagctggtattgatgaatgtatgtgtgtacttcagGGAGAAGCCAAGAGTGCTCAACTTATTGGTGACGCCATTTCTAACAATCCAGCTTTCATCACCTTGAGAAAGATTGAGGCTAGTAGAGAAATTGCGAACA
species | Physcomitrella patens |
transcript | PP1S41_59V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGAGAAGGCAGAGCAGGACNNNNNNNGTGCCATCATCCGTGCTCAG GGAGAAGCCAAGAGTGCTCAACTTATTGGTGACGCCATTTCTAACAATCCAEST: gi|37852460|gb|BJ610468.1|BJ610468
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAAAAGTGCCATCATCCGTGCTCAGgtgcttcaca ... tgtacttcagGGAGAAGCCAAGAGTGCTCAACTTATTGGTGACGCCATTTCTAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACNNNNNNNGTGCCATCATCCGTGCTCAG GGAGAAGCCAAGAGTGCTCAACTTATTGGTGACGCCATTTCTAACAATCCAEST: gi|162223900|gb|FC398906.1|FC398906
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAAAAGTGCCATCATCCGTGCTCAGgtgcttcaca ... tgtacttcagGGAGAAGCCAAGAGTGCTCAACTTATTGGTGACGCCATTTCTAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACNNNNNNNGTGCCATCATCCGTGCTCAG GGAGAAGCCAAGAGTGCTCAACTTATTGGTGACGCCATTTCTAACAATCCA
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAAAAGTGCCATCATCCGTGCTCAGgtgcttcaca ... tgtacttcagGGAGAAGCCAAGAGTGCTCAACTTATTGGTGACGCCATTTCTAACAATCCA
agaggtctatcatcaaatttgagctggtattgatgaatgtatgtgtgtacttcagGGAGAAGCCAAGAGTGCTCAACTTATTGGTGACGCCATTTCTAACAATCCAGCTTTCATCACCTTGAGAAAGATTGAGGCTAGTAGAGAAATTGCGAACA
tattgat putative branch site (score: 7)
atcaaattt TA-rich tract