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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttgaatagtgatatgtacctgtggtcgaatggcaattcctttcagacagtttttatgtttgagatgaatagctctctttcaagtagttcatggaatcgtgtgtttttgttgaaggggtttttgtcggggatggtgttgtttgtttaggaattactgagattacgttttaccctgctgctgcaacgttaacagGTGAGAATTACGTTGCGAGTGCTGACGCGCCCTATGGCGGATCGACTGCCTACGATCTACCGCACACTAGGACAAGACTATGCGGAACGAGTTCTGCCTT

Basic information

species Physcomitrella patens
transcript PP1S41_59V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18359062|gb|BJ191122.1|BJ191122
EST:     CACGACCTAACATTGTCGAGAGCACGTCGGGGAGTAGGGATCTTCAAATG                         GTGAGAATTACGTTGCGAGTGCTGACGCGCCCTATGGCGGATCGGCTGCCT
genomic: CACGACCTAACATTGTCGAGAGCACGTCGGGGAGTAGGGATCTTCAAATGgtacgttgaa ... acgttaacagGTGAGAATTACGTTGCGAGTGCTGACGCGCCCTATGGCGGATCGACTGCCT
EST: gi|162223901|gb|FC398907.1|FC398907
EST:     CACGACCTAACATTGTCGAGAGCACGTCGGGGAGTAGGGATCTTCAAATG                         GTGAGAATTACGTTGCGAGTGCTGACGCGCCCTATGGCGGATCGACTGCCT
genomic: CACGACCTAACATTGTCGAGAGCACGTCGGGGAGTAGGGATCTTCAAATGgtacgttgaa ... acgttaacagGTGAGAATTACGTTGCGAGTGCTGACGCGCCCTATGGCGGATCGACTGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtttaggaattactgagattacgttttaccctgctgctgcaacgttaacagGTGAGAATTACGTTGCGAGTGCTGACGCGCCCTATGGCGGATCGACTGCCTACGATCTACCGCACACTAGGACAAGACTATGCGGAACGAGTTCTGCCTT
           aattact  TA-rich tract