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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAATACAGCTCGGTGGGTTGAAGAAGTCCGAACAGAGCGTGGAAGTGATGTTATTATTATGCTCGTCGGAAATAAGACTGATCTTGTTGATAAACGgtgaggaaactatggtacaagctaatactggctgttttctgagtagacgttattctatatcttgacgtaatagccaccagaacagagttcgtagactcgcacgctcttctttattttttcacaacttgatgtatcctgcgggaagccttgtggatgagaagattgcatgtctttttgtctgtttcag

Basic information

species Physcomitrella patens
transcript PP1S39_147V6.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_147V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA08G14390.1 (Glycine max), 5'ss of exon 4
TTATGAATACAGCTCGGTGGGTTGAAGAAGTCCGAACAGAGCGTGGAAGTGATGTTATTATTATGCTCGTCGGAAATAAGACTGATCTTGTTGATAAACGgtgaggaa-actatggtacaagctaatactggctgttttctgagtagacgttattctatatcttgacgtaatagccaccagaacagagttcgtagactcgcacgctcttctttattttttcacaacttgatgtatcctgcgggaagccttgtggatgagaagattgcatgtctttttgtctgtttcag
|| |||| ||      ||||||||| || || || ||||| ||||| ||||||||||||||| || | || ||||| || |||||||||||||| ||| |||||| |  | | ||||  |   ||  | |   |  ||| | |  | |    |||||  |   |   || |        ||   |   ||    |  | | ||  |||  |                                                                             
TTCTGAACACTAACAAGTGGGTTGAGGAGGTTCGTACAGAACGTGGCAGTGATGTTATTATTGTGTTGGTTGGAAACAAAACTGATCTTGTTGAAAAAAGgtgagtactaatttggtcta---tatgattctttaatttataaaaaaattaaattcttaactgttttgtta--------agcggaagttttagtgttttgaaccttctatt-----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15728651|gb|BI740899.1|BI740899
EST:     GATGTTATTATTATGCTCGTCGGAAATAAGACTGATCTTGTTGATAAACG                         TCAAGTGTCTATTGAAGAAGGTGACGCTAAAGCTAAGGAATTTGGAGTCAT
genomic: GATGTTATTATTATGCTCGTCGGAAATAAGACTGATCTTGTTGATAAACGgtgaggaaac ... tctgtttcagTCAAGTGTCTATTGAAGAAGGTGACGCTAAAGCTAAGGAATTTGGAGTCAT
EST: gi|208346149|gb|DC917102.1|DC917102
EST:     GATGTTATTATTATGCTCGTCGGAAATAAGACTGATCTTGTTGATAAACG                         TCAAGTGTCTATTGAAGAAGGTGACGCTAAAGCTAAGGAATTTGGAGTCAT
genomic: GATGTTATTATTATGCTCGTCGGAAATAAGACTGATCTTGTTGATAAACGgtgaggaaac ... tctgtttcagTCAAGTGTCTATTGAAGAAGGTGACGCTAAAGCTAAGGAATTTGGAGTCAT