Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagttctattccctctctctgacgcggtgatttaatgtgtatggggggcattttctcacaatctctaatcacatttcgtgagtaaaagatctaaatttgagtggcattgccagGTAAAACAAGTATCATCACGCGATTCATGTATGACAAATTTGACAACACGTACCAG

Basic information

species Physcomitrella patens
transcript PP1S39_147V6.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_147V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EDP09951 (Chlamydomonas reinhardtii), 3'ss of exon 1
gcaagttctattccctctctctgacgc--ggtgatttaatgtgt-atggggggcattttctcacaatctctaatcacatttcgtgagtaaaagatctaaatttgagtggcattgccagGTAAAACAAGTATCATCACGCGATTCATGTATGACAAATTTGACAACACGTACCAG
|   ||    |    |    |||  ||  ||  |   |  |||  |    |  ||||    | |   ||        | || |    |  | | |||   |  |||     |     || || ||    |||||||| ||||||||||||||||| || || ||||||||||||
gtgtgtctcttctgttgctcctggagcttggcaaagcagcgtgcgactccgatcattcaggcgcttactagcggtggacttggctcctgcagG-TCTTCCTGGGAGACCAGTCTGTGGGCAAGACCTCCATCATCACCCGATTCATGTATGACAAGTTCGATAACACGTACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208346149|gb|DC917102.1|DC917102
EST:     GTGACCAGTCAGTGG                         GTAAANCAAGTATCATCACGCGATTCANGTATGACAAA-TTGACAACACGT
genomic: GTGACCAGTCAGTGGgcaagttcta ... gcattgccagGTAAAACAAGTATCATCACGCGATTCATGTATGACAAATTTGACAACACGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatctctaatcacatttcgtgagtaaaagatctaaatttgagtggcattgccagGTAAAACAAGTATCATCACGCGATTCATGTATGACAAATTTGACAACACGTACCAG
                              atctaaa  putative branch site (score: 3)
                        taaaagatctaaattt  TA-rich tract