1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaataaagaatactcatttgttttaagtccacgttttgatctctttactgcttcgttgataccccgtgagagcaaaggtttgagtactctctgatgttgaattttctattttctgaataccctgtgtgttggctatgttgcttgttacagAGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGGTGTTAATATGTGGCCCGGAGAGCCTGCAGACGAGCGTTGCTGAGACATG
species | Physcomitrella patens |
transcript | PP1S39_125V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTGCACCCTGACAATACAACGTTTGGTCATAGGCCCAACCTCAGAG AGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGGEST: gi|162241991|gb|FC419403.1|FC419403
genomic: GCTGGTGCACCCTGACAATACAACGTTTGGTCATAGGCCCAACCTCAGAGgtaaataaag ... cttgttacagAGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGG
EST: GCTGGTGCACCCTGACAATACAACGTTTGGTCATAGGCCCAACCTCAGAG AGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGGEST: gi|162256457|gb|FC432488.1|FC432488
genomic: GCTGGTGCACCCTGACAATACAACGTTTGGTCATAGGCCCAACCTCAGAGgtaaataaag ... cttgttacagAGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGG
EST: GCTGGTGCACCCTGACAATACAACGTTTGGTCATAGGCCCAACCTCAGAG AGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGGEST: gi|67698073|gb|BJ958306.1|BJ958306
genomic: GCTGGTGCACCCTGACAATACAACGTTTGGTCATAGGCCCAACCTCAGAGgtaaataaag ... cttgttacagAGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGG
EST: GCTGGTGCACCCTGACAATACAACGTTTGGTCATAGGCCCAACCTCAGAG AGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGG
genomic: GCTGGTGCACCCTGACAATACAACGTTTGGTCATAGGCCCAACCTCAGAGgtaaataaag ... cttgttacagAGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGG
gttgaattttctattttctgaataccctgtgtgttggctatgttgcttgttacagAGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGGTGTTAATATGTGGCCCGGAGAGCCTGCAGACGAGCGTTGCTGAGACATG
attttctattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataaagaatactcatttgttttaagtccacgttttgatctctttactgcttcgttgataccccgtgagagcaaaggtttgagtactctctgatgttgaattttctattttctgaataccctgtgtgttggctatgttgcttgttacagAGCTTTTCCAAGGTTGTGCGAAGCGCCAACGCCCTGGCACAAACGTAGGGGTGTTAATATGTGGCCCGGAGAGCCTGCAGACGAGCGTTGCTGAGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG